Current ecological stream restoration is focusing on recovery of physical characteristic and ecological functions of individual stream. For effective stream restoration, the relationship between stream environment and riparian flora should be investigated. The purpose of this study is to analyze the relationship between disturbance of hydromorphological structures and naturalized plants ratio in small to mid-sized streams. For the study sites, Gwanpyeong stream, Dongdal stream, and Yongchoo streams were chosen as 'reference stream' while, Gunnam stream, Anchang stream, and Hwa stream were chosen as 'damaged stream'. The hydromorphological structures of streams were evaluated with LAWA and flora of the streams were completely enumerated to calculate naturalized plants ratio. The result showed that there was a significant correlation between the outcome of LAWA and naturalized plants ratio(r=0.675, p<0.01). The result of factor analysis of LAWA identified three factors, 'River 208 천예준․최윤의․홍선희․전진형 front and land use', 'River bed materials and structures', and 'Crossing structure and bar'. Among the factors of hydromorphological structures given by the result of factor analysis, 'river front and land use' and 'bed materials and structures' have statistically significant relationship with naturalized plants ratio (R²=0.470, p<0.01). Given this results, quantitative analysis on the relationship between disturbance of hydromorphological structures of streams and naturalized plants ratio could provide some essential information for stream restoration. Also, as this study figured out major factors of hydromorphological structures that affect naturalized plants ratio, it might help monitor ecological states and current problems of small and mid-sized streams.