We have characterized the structural rearrangements of a chromosome 21 that led to the de novo formation of a human ring chromosome 21 [r(21)]. Molecular cloning and chromosomal localization of the DNA regions flanking the ring junction provide evidence for a long arm to long arm fusion in formation of the r(21). In addition, the centromere and proximal long arm region of a maternal chromosome 21 are duplicated in the r(21). Therefore, the mechanism in formation of the r(21) was complex involving two sequential chromosomal rearrangements. (i) Duplication of the centromere and long arm of one maternal chromosome 21 occurred forming a rearranged intermediate. (ii) Chromosomal breaks in both the proximal and telomeric long arm regions on opposite arms of this rearranged chromosome occurred with subsequent reunion producing the r(21).Ring chromosomes in humans represent a class of aberrant chromosomes observed frequently in congenital anomalies and occasionally with normal phenotypes (1). Most ring chromosomes arise de novo, yet occasional familial transmission has been reported (2-5). The frequency of ring chromosomes is 1 in 25,000 recognized conceptions (6), and all human chromosomes have been observed as rings. Almost 50% of ring autosomes are derived from the acrocentric chromosomes (7). The proposed mechanism of ring formation, breakage of both short and long arms of a chromosome with subsequent end to end fusion (8), remains unproven. In several reports of acrocentric ring chromosomes, a Robertsonian translocation produced by short arm fusion has been observed in the patient, a parent, or a sibling (9)(10)(11)(12)(13)(14)(15)(16) (19). The R2-10 line was also back selected for loss of the r(21) (cell line R2-1OW-S5) by growth in nonselective (purine supplemented) medium, followed by selective medium with the addition of bromodeoxyuridine and light (22). For mapping, a panel of somatic cell hybrids, 72532X-6, 153E7bx, and 2FuR1 (23), with characterized rearrangements of human chromosome 21 was used (19).Cloning the Chromosomal Break Points. DNA from the patient's blood lymphocytes was digested with EcoRI and a size-selected library (7-9 kb) was made in Agtwes B. About 300,000 recombinant phage were screened (24) with pPW231C and a single clone, A21BP (Fig. 1B), was purified. DNA from the region on the 3' side of the break point was cloned (A2lpq) by using probe CW21A from a flow-sorted, HindIII-digested chromosome 21 library in Charon 21A (ID code, LL21NS02; American Type Culture Collection number, 57713).Immunofluorescence Studies. For quantification of DNA, photographic negatives of 4',6-diamidino-2-phenylindole (DAPI)-stained (25) images were scanned using a Loats (Westminster, MD) video densitometer equipped with a twodimensional gel-scanning software package. Indirect immunofluorescence was performed on mitotic spreads (26). Chromosomes were first stained with DAPI and then with a monoclonal anti-centromere antibody prepared against the cloned 80-kDa human autoantigen