Whitmania pigra Whitman (phylum Annelida) is a widely distributed
freshwater leech in East Asia, with an annual consumption of nearly
1,000 tons dry bodies for curing blood stasis syndrome. W. Pigra has be
seen as a representative model organism of neurodevelopmental studies.
Here, we sequenced a Chinese individual by sin-gle-molecule real-time
(SMRT) long-read sequencing, and generated a de novo as-sembly of 178.87
Mb with contig N50 2.0 Mb. In addition, we obtained a total of 239.64 Gb
transcriptome data of eight representative developmental phases of
embryos (from blastocyst stage to maturity). Totally, 21482 genes were
annotated, among these, 3114 genes were differentially expressed with
phase-specific expression pattern, and mainly in the middle and late
development (G, H, I, J phase). Using a comprehensive transcriptome
dataset, we demonstrated that 57, 49 and 77 DEGs were respectively
related to morphogenesis, signal pathways and neurogenesis. 49 DEGs
related to signal pathways included 30 wnt genes, 14 notch genes, and 5
hedgehog genes. In par-ticular, we found a cluster consisting of 7 genes
related to signal pathways as well as synapses, which were essential for
regulating embryonic development. To some ex-tent, our results are
helpful to reveal the whole picture of development mechanism from the
perspective of transcriptome and also provide new clues for
organogenesis and neurodevelopmental studies of Annelida species.