Due to their large size and obligate nature, Cymothoid isopods inflict a high degree of tissue damage to fish. Still, they are understudied at an ecosystem level despite their global presence and ecological role. In this work, we collected fish host‐isopod parasite data, along with their life history and ecological traits, from the northern part of the east coast of India and investigated patterns in host specialisation and preference of isopod parasites using a trait‐based network perspective. We observed that the region of attachment of the parasite (buccal cavity, branchial cavity, and skin) and host fish ecology (schooling behaviour and habitat characteristics) influenced host specialisation and preference. We found that branchial cavity‐attaching parasites preferred schooling, pelagic fishes, whereas buccal cavity‐attaching parasites preferred mostly non‐schooling, demersal fishes. Skin‐attaching parasites were found to be generalists and had no preference based on our examined host traits.