“…Using TaqMan 5′-nuclease assay (Applied Biosystems, Forster City, CA, USA) pre-designed allele-specific fluorogenic oligonucleotide probes, we genotyped SNPs in genes encoding the following innate and adaptative immune molecules: Toll-like receptor (TLR)1 ( rs 4833095), TLR2 ( rs 4308099, rs 4308100, rs 4696480), TLR6 ( rs 5743810), TLR10 ( rs 11466653, rs 11096957), all located in chromosome 4 and belonging to the TLR1 subfamily ( 20 ); natural killer (NK) group 2 member D (NKG2D) receptor ( rs 1982536, rs 2617160, rs 2617169, rs 2617170, rs 2617171, rs 1049174, rs 2246809, rs 2255336), in chromosome 12; human leukocyte antigen (HLA)-G ( rs 9380142), HLA-E ( rs 2517523), major histocompatibility complex class I polypeptide-related sequence A (MICA, rs 1057192), in the chromosome 6; and cytotoxic T-lymphocyte-associated antigen 4 (CTLA-4) ( rs 5742909, rs 231775), in the chromosome 2. DNA pre-amplification and real-time polymerase chain reaction (RT-PCR) were performed as previously described ( 15 , 21 ). All SNPs included in this analysis were selected based on the relevance of their biological function.…”