With the demand for high resolution remote sensing, load array technology has gradually become an effective measure to improve imaging resolution. However, the external flow and internal engine vibration disturbance may lead to the flexible deformation of wings. The traditional rigid baseline error compensation method cannot solve the problem of serious coupling movement error caused by flexible deformation. To address the problem, a transfer alignment model based on fiber Bragg grating for distributed position and orientation system is proposed in this paper. Firstly, based on the multidimensional requirements of flexible deformation information, the layout scheme of fiber Bragg grating was designed, then the continuous strain in the wing surface was obtained after the quadratic fitting of strain measured by fiber Bragg gratings, and the deformation displacement and angle are calculated. Thirdly, flexible deformation compensation for distributed position and orientation system based on fiber Bragg grating was studied. The state equation including position error, velocity error, misalignment angle, and inertial device error was established. The position and attitude information compensated by the flexible lever arm was used as the quantitative measurement. The filtering estimation improved the measurement accuracy of the slave inertial navigation systems. At last, the experiment was carried out and showed that the accuracy of the transfer alignment has been improved significantly. the distributed POS (DPOS) [6,7]. DPOS is composed of a high-precision master IMU, a navigation computer, a global positioning system, and a number of low-precision sub-IMUs. IMU is installed at the different nodes of the carrier, and transfer alignment of each sub-IMU is carried out using the high-precision navigation information obtained from the main POS, which can provide accurate position and orientation information for all the phase points of distributed SAR and other kinds of loads, and achieve high-precision imaging [8].The subarray antenna is often installed at different wing nodes, which is limited by volume weight and even cost and conducts distributed motion measurement often using MEMS-IMU, and its precision is far lower than that of the main system. When the array antenna SAR is three-dimensional imaging, not only is the motion compensation required at each node, but also the required precision of the baseline length between nodes is very high [9]. At present, most of the technical means are accomplished by mathematical modeling or filtering, for example, the second-order Markov process is used to describe the deformation process, in which the parameters are often selected through experience, and the aerodynamics model is used to analyze the wing model [10,11]; the process is very complex, and the wing material, vibration frequency and wing length should be considered. The model based on CKF is used, which features poor anti-interference performance [12,13]. Moreover, the mathematical modeling method has strong pertinence ...