Clustering and asymmetric distribution of receptors, ion channels and associated protein complexes are essential to the polarity of neurons and epithelial cells. Such asymmetric targeting of large molecular assemblies is thought to be governed in part by modular scaffold proteins. L27 domain, initially identified in the C. elegans Lin-2 and Lin-7 proteins, is a protein interaction module that exists in a large family of scaffold proteins 1 . Formation of the trimeric Lin-2-Lin-7-Lin-10 complex requires L27 domains 2,3 and has a central role in targeting receptor tyrosine kinase Let-23 signalsome to the basolateral surface of vulval precursor cells 4,5 . Mutations in Lin-2, Lin-7 or Lin-10 lead to a vulvaless phenotype, presumably by mistargeting of 5). The mammalian orthologs of Lin-2, Lin-7 and Lin-10 are known as mammalian Lin-2 (mLin-2)/CASK, mLin-7/Velis/Mals and mLin-10/X11α/Mint1, respectively 2,6-9 . The mLin-2-mLin-7-mLin-10 tripartite complex has also been observed in the brain 2,6 , and this evolutionarily conserved protein complex has been implicated in the targeting of NMDA receptors and β-catenin assemblies to membrane subdomains in epithelia and neurons 10,11 .A bioinformatics survey reveals that L27 domain-containing proteins are invariably scaffold proteins containing multiple proteinprotein interaction domains without intrinsic enzyme activities 12 . For example, SAP97 and mLin-2/CASK, which are members of a subset of membrane-associated guanylate kinases (MAGUKs), contain one and two L27 domains, respectively, in addition to their PDZ, SH3 and guanylate kinase-like domains. The N-terminal L27 domain of SAP97 can form specific heteromeric complexes with the N-terminal L27 domain of mLin-2, Dlg2 and Dlg3, respectively 3,13,14 . The C-terminal L27 domain of mLin-2 specifically binds to the L27 domain of 15). The discovery of L27 domains as specific protein-protein interaction modules capable of forming heteromeric complexes suggests that L27 domains can integrate multiple scaffold proteins into supramolecular assemblies 1,3,13,15,16 . However, the molecular basis of the L27 domain-mediated protein assembly formation remains unclear. The structures of isolated L27 domains and their cognate heteromeric complexes are not known.Here we show that the L27 domain of SAP97 and the N-terminal L27 domain of mLin-2 form a heterotetrameric complex. The structure of the SAP97-mLin-2 L27 complex was solved by NMR spectroscopy. The structure of the complex, together with data derived from various biochemical studies, establishes the roles of specific residues in the formation of the L27 heterotetrameric complex. The structure of the SAP97-mLin-2 L27 complex further suggests a mechanistic model for polymerization of L27 domain scaffold proteins.
RESULTS
L27 domains form specific heterotetrameric complexesWe first characterized the structural properties of the isolated L27 domains of SAP97 (referred to as L27S below), mLin-7, the N-terminal L27 domain (referred to as L27N below), and the C-terminal L27 domain (ref...