Dehalococcoides species have a highly restricted lifestyle and are only known to derive energy from reductive dehalogenation reactions. The lipid fraction of two Dehalococcoides isolates, strains BAV1 and FL2, and a tetrachloroethene-to-ethene-dechlorinating Dehalococcoides-containing consortium were analyzed for neutral lipids and phospholipid fatty acids. Unusual phospholipid modifications, including the replacement of unsaturated fatty acids with furan fatty acids, were detected in both Dehalococcoides isolates and the mixed culture. The following three furan fatty acids are reported as present in bacterial phospholipids for the first time: 9-(5-pentyl-2-furyl)-nonanoate (Fu18:26), 9-(5-butyl-2-furyl)-nonanoate (Fu17:25), and 8-(5-pentyl-2-furyl)-octanoate (Fu17:26). The neutral lipids of the Dehalococcoides cultures contained unusually large amounts of benzoquinones (i.e., ubiquinones [UQ]), which is unusual for anaerobes. In particular, the UQ-8 content of Dehalococcoides was 5-to 20-fold greater than that generated in aerobically grown Escherichia coli cultures relative to the phospholipid fatty acid content. Naphthoquinone isoprenologues (MK), which are often found in anaerobically grown bacteria and archaea, were also detected. Dehalococcoides shows a difference in isoprenologue pattern between UQ-8 and MK-5 that is atypical of other bacteria capable of producing both quinone types. The difference in UQ-8 and MK-5 isoprenologue patterns strongly suggests a special function for UQ in Dehalococcoides, and Dehalococcoides may utilize structural modifications in its lipid armamentarium to protect against free radicals that are generated in the process of reductive dechlorination.Tetrachloroethene (PCE) and trichloroethene (TCE) are ideal solvents for degreasing and dry cleaning, and their widespread use has led to massive groundwater pollution. Many impacted subsurface environments are cocontaminated with more readily degradable petroleum hydrocarbons at many military sites or with starch at dry-cleaning sites. Microbes readily utilize aerobically degradable substrates, thus depleting oxygen in the groundwater and inducing anaerobiosis. Biotic and abiotic processes acting on these chlorinated solvents facilitate the formation and accumulation of toxic intermediates such as the dichloroethenes (DCEs) and the human carcinogen vinyl chloride (VC). Of the 1,430 contaminated sites listed on the U.S. EPA National Priorities List, 64% contain TCE, 54% contain PCE, and 35% contain VC (51).A variety of subsurface bacteria are capable of anaerobic reductive dehalogenation, which represents the initial attack on these chlorinated solvents (43). Sulfate-reducing and acetogenic bacteria as well as methanogenic archaea can fortuitously catalyze reductive dehalogenation by free or enzymebound, metal ion-containing, heat-stable tetrapyrroles (9). Calculations of redox potentials for corresponding Cl-alkyl/ alkyl couples range from ϩ250 to ϩ487 mV, suggesting that chloroorganic compounds are favorable electron acceptors (7)....