Mamuju is an area of high natural radiation in Indonesia with high natural radiation levels (average 613 nSv h−1). Mamuju is anomalous due to its high average 238U and 232Th concentrations of 22,882 and 33,549 Bq kg−1, respectively, in laterite and rock. High natural radionuclide concentrations of 238U, 232Th, and 40K have also been reported in soil samples from several locations in Mamuju, including Botteng, Northern Botteng, Takandeang, Ahu, and Taan. High radiation levels are related to radioactive mineral occurrences in the Adang volcanic complex, comprised of phonolitoid and foiditoid lithologies. According to the International Atomic Energy Agency (IAEA), uranium deposits can be classified into several types, among them a volcanic-related deposits, which include three sub-types: stratabound, structure-bound, and volcano-sedimentary deposits. This study aims to characterize volcanic rock deposit sub-types in the Mamuju area based on uranium radioisotope measurements. The uranium isotopes were measured using a tandem quadrupole inductively coupled plasma mass spectrometer combined with chemical separation by extraction chromatography using UTEVA resin. The analytical results for the 234U/238U ratios are used to determine the formation characteristics of minerals in each deposit sub-type based on mineral formation age, post-formation processes, and disturbances that affected the formation processes. Based on geochronological calculations using 234U/238U mineralization age, the deposits in the Mamuju area are 0.914–1.11 million years old and are classified as recent mineralization. These data have important implications for tracing uranium source rocks in the Mamuju area and may explain the anomalously high radiation levels in the Mamuju area.