The effect of various chemical modifications of nitrogen atoms on the efficiency of polyethylenimines (PEIs) as synthetic vectors for the delivery of plasmid DNA into monkey kidney cells in vitro has been systematically investigated. The resultant structureactivity relationship has both provided mechanistic insights and led to PEI derivatives with markedly enhanced performance. For example, N-acylation of PEI with the molecular mass of 25 kDa (PEI25, one of the most potent polycationic gene delivery vectors) with alanine nearly doubles its transfection efficiency in the presence of serum and also lowers its toxicity. Furthermore, dodecylation of primary amino groups of 2-kDa PEI yields a nontoxic polycation whose transfection efficiency in the presence of serum is 400 times higher than the parent's and which exceeds 5-fold even that of PEI25.I nterest in gene therapy has soared in recent years because of its great promise in treating diseases ranging from inherited disorders to acquired conditions and cancer (1-3). However, much progress remains to be made before safe and reliable gene delivery vehicles are developed (4). Side reactions provoked by the viral elements, e.g., immune response and insertional mutagenesis (5), have prompted efforts to improve nonviral delivery systems (vectors) (6-8). Synthetic vectors based on polycations are particularly attractive because of their potential safety, nucleic acid cargo capacity, and designability (9-11). And yet, currently available polycations are severely limited by their low efficiencies (4,8).Improvements in gene delivery by polyplexes (polycation͞ DNA complexes) may come from a detailed examination of their mechanism of action, establishing the underlying structureactivity relationships, and manipulation of the vectors accordingly (12-16). Polyethylenimine (PEI), a readily available synthetic polycation introduced for transfection a few years ago (17), is an ideal candidate for such mechanistic investigations owing to its already relatively high transfection efficiency and ease of functionalization.Elucidation of the mechanism of PEI-mediated gene delivery has received much attention in recent years (18-24). Since every third atom in PEI is a protonatable nitrogen, the overall protonation level should rise when the pH drops to Ϸ5 inside the lysosomal compartment, leading to the influx of chloride ions and, consequently, to osmotic swelling and rupture of the lysosome. The early escape of the PEI͞DNA complex from the lysosome, and thus the avoidance of lysosomal degradation arising from the ''proton sponge effect,'' was postulated to be the cause of the high transfection efficiency exhibited by PEIs (17); this concept, however, has been recently challenged (22).In the present study, we carried out systematic chemical modifications of commercial branched PEIs with the goal of understanding and enhancing PEI-mediated transfection. PEIs with molecular masses of 25 and 2 kDa were selected because they exhibit high and low transfection efficiencies, respectively (17)...