The inhibition by 4,4'-diisothiocyano-2,2'-stilbenedisulfonate (DIDS) of Cl-channels from Torpedo electroplax incorporated in planar phospholipid bilayer membranes is studied. DIDS irreversibly and rapidly inhibits the macroscopic conductance of membranes containing many channels. At the single-channel level, the effect of DIDS is more complicated. The uninhibited single channel displays three "substates" of conductances 20, 10, and 0 pS. Short exposure (5-30 s) to 10 j&M DIDS converts this three-level active channel into a "conventional" channel of 10-pS conductance. Longer exposure eliminates all channel fluctuations. The results are taken as strong evidence that the ClF channel is constructed as a functional dimer of identical protein subunits.In the plasma membrane of the electric organ of Torpedo californica resides a Cl--specific channel whose function is to establish the electroplax cell as a low-internal-resistance battery that the fish may use as a source of electric current in stunning its prey (1-5). This channel has been characterized in detail, after insertion into planar lipid bilayers (1-5) or giant lipid vesicles (6, 7), by observation of current fluctuations under voltage-clamp conditions. At the single-channel level, an unusual gating behavior is observed: a "bursting" process in which the open channel displays three distinguishable "substates" (4,5). This open-channel substructure is uncommonly well-behaved and has led to a simple physical picture of the Cl-channel as a functional dimer. We have proposed that the three active substates result from the independent opening and closing of two identical Cl-diffusion pathways, or "protochannels" (4, 5). In this scheme, the dimeric channel complex may exist with both protochannels simultaneously open, with one open and one closed, or with both closed. In this way, the three substates, equally spaced in conductance, are generated. According to this view, the protochannels must be intimately associated in a complex because of the channel's bursting behavior: the simultaneous appearance and disappearance of both protochannels.This "double-barreled shotgun" model for the channel is quite eccentric, but it is well supported by several lines of evidence (4, 5): the equal spacing in conductance of the three substates, the binomially distributed probabilities of the appearance of the substates, and the "dimeric" transition probabilities among the substates. But this stochastic evidence is, ultimately, indirect. In this report, we present much stronger evidence for the dimeric structure of this channel by examining the action of 4,4'-diisothiocyano-2,2'-stilbenedisulfonate (DIDS) on the channel's substate behavior. We argue that this irreversible inhibitor can be used to trap a "half-inhibited" channel complex in which only one of the protochannels is able to function and, thus, may be observed directly.MATERIALS AND METHODS Biochemical. Noninnervated face vesicles of T. californica electroplax were prepared immediately after dissection of the tissue...