Developmental gene functions of Drosophila are typically characterized by a recognizable mutant phenotype. When molecular probes ofsuch genes were used to isolate homologues, distinct spatially and temporally restricted expression patterns were observed in vertebrates as well. However, corresponding "gene knock-outs" often revealed subtle or no scorable phenotypes, a phenomenon attributed to redundant gene functions. We found that the evolutionarily related genes knirps (kni) and knlirps-related (karl) contribute to a similar phenomenon in Drosophila. The two closely situated genes show identical expression patterns in the developing embryo, including the posterior and anterior expression domains in the blastoderm. Here we show that the two biochemically equivalent gene products are both functional in the head anlage and that the lack of one gene activity can be overcome by the activity of the other. Whereas kni is also required for abdominal segmentation, knrl is nonfunctional in its posterior expression domain. Thus, the kni/knrl pair of genes provides a region-specific buffering system, rather than a case of global functional redundancy.Much of the recent success in identifying Drosophila genes involved in the process of biological pattern formation was based on mutations that cause scorable phenotypes in the cuticle of the larva (1-3). However, the picture emerging from previous studies in yeast (4)(5)(6) and current analysis of vertebrate development (7-10) suggests that the complete loss of certain specific genes can have remarkably little, if any, effect on the phenotype of the cell or embryo. These observations imply that the function of such genes is buffered by the activity of other genes or by parallel genetic pathways. This phenomenon, also referred to as functional redundancy, is attributed to gene duplications during evolution. Evidence for such duplications has been obtained with a number of Drosophila segmentation genes such as engrailed (en) (11, 12), knirps (kni) (13, 14), gooseberry (gsb) (15,16), and sloppy paired (slp) (17) suggests that kni and knrl represent a region-specific "buffering system", rather than a case of general redundancy.
MATERIALS AND METHODSMutants, Whole-Mount Staining, and Generation of Transgenic Fles. Whole-mount in situ hybridization with kni and knrl cDNAs (13,19), stainings with 4D9 antiengrailed (21) and 22C10 antibodies (22), as well as larval cuticle preparations were done according to standard protocols (23)(24)(25). After staining, embryos were embedded in Araldite, put into capillaries (26), and analyzed under a Zeiss compound microscope with Nomarsky optics. kniFCl3 was used as a kni lack-of-function allele (27). Df(3L)rixT" is a deletion uncovering the region 77E-78A (28), including both kni and knrl (14). The kni transgene contains a 9.5-kb genomic Sal 1-Hind-III fragment that contains the kni transcription unit and =6.5 kb offlanking sequences (29) cloned into Carnegie 20 (30), as described (20). The knrl transgene includes the coding sequence of t...