Immature glutamatergic synapses in cultured neurons contain high-release probability (P r ) presynaptic sites coupled to postsynaptic sites bearing GluN2B-containing NMDA receptors (NMDARs), which mature into low-P r , GluN2B-deficient synapses. Whether this coordinated maturation of high-P r , GluN2B ϩ synapses to low-P r , GluN2B-deficient synapses actually occurs in vivo, and if so, what factors regulate it and what role it might play in long-term synapse function and plasticity are unknown. We report that loss of the integrinregulated Abl2/Arg kinase in vivo yields a subpopulation of "immature" high-P r , GluN2B ϩ hippocampal synapses that are maintained throughout late postnatal development and early adulthood. These high-P r , GluN2B ϩ synapses are evident in arg Ϫ/Ϫ animals as early as postnatal day 21 (P21), a time that precedes any observable defects in synapse or dendritic spine number or structure in arg Ϫ/Ϫ mice. Using focal glutamate uncaging at individual synapses, we find only a subpopulation of arg Ϫ/Ϫ spines exhibits increased GluN2B-mediated responses at P21. As arg Ϫ/Ϫ mice age, these synapses increase in proportion, and their associated spines enlarge. These changes coincide with an overall loss of spines and synapses in the Arg-deficient mice. We also demonstrate that, although LTP and LTD are normal in P21 arg Ϫ/Ϫ slices, both forms of plasticity are significantly altered by P42. These data demonstrate that the integrin-regulated Arg kinase coordinates the maturation of presynaptic and postsynaptic compartments in a subset of hippocampal synapses in vivo, and this coordination is critical for NMDAR-dependent long-term synaptic stability and plasticity.