Type XIII collagen consists of a short N-terminal intracellular domain, a transmembrane domain, and a collagenous ectodomain, and it is found at many sites of cell adhesion. We report on the characterization of recombinant type XIII collagen. The shed ectodomain was purified from insect cell culture medium and shown to form 240-kDa trimers with a T m of 42°C. Correct chain association into a triple-helical conformation was confirmed by limited pepsin digestion and CD spectroscopy. Rotary shadowing electron microscopy of the ectodomain revealed it to be a 150-nm rod with two flexible hinges separating 31-, 52-, and 68-nm portions. The rods represent the collagenous domains 1-3, and the hinges coincide with the non-collagenous domains 2 and 3. By using surface plasmon resonance analysis, the ectodomain showed interaction with immobilized fibronectin, nidogen-2, and perlecan with K D values in the nanomolar range. The binding sites of type XIII collagen for fibronectin were localized to the collagenous domains, whereas the binding activities for nidogen-2 and perlecan resided in the pepsin-sensitive portions of the ectodomain. Furthermore, the ectodomain bound significantly to heparin, which also inhibited shedding of the ectodomain in insect cell cultures. The results reveal that type XIII collagen is notably distinct in its structure compared with other cell-surface proteins, and the in vitro binding with fibronectin, heparin, and two basement membrane components is indicative of multiple cell-matrix interactions in which this ubiquitously expressed protein participates.Two of the 19 collagens described in vertebrates belong to the subgroup of transmembrane collagens, namely type XIII and the hemidesmosomal component, type XVII collagen (1-3). These two nonfibrillar collagens are not structurally homologous except that both have a transmembrane domain. The collagen superfamily also includes other transmembrane proteins that have short collagenous domains, namely the types I and II macrophage scavenger receptors; C1q, the first component of complement C1; a macrophage receptor with a collagenous structure; and the ectodysplasin-A family of proteins (1, 3, 4).Type XIII collagen molecules reside in the plasma membrane of cells in a type II orientation with a short N-terminal cytosolic domain, a single transmembrane domain, and a large, mainly collagenous ectodomain (5, 6). The N-terminal non-collagenous domain, NC1, 1 of the human protein encompasses a 38-residue cytosolic domain, a 23-residue transmembrane domain, and the first 60 residues of the non-collagenous extracellular sequences adjacent to the plasma membrane (5). The rest of the ectodomain contains three collagenous sequences, COL1-3, with sizes of 104, 172, and 235 residues, respectively, and non-collagenous domains, NC2-4, with sizes of 34, 22, and 18 residues (5). The precursor RNAs encoding human and mouse type XIII collagen are known to be subject to complex alternative splicing, and hence the sizes of the COL1, NC2, COL3, and NC4 domains in humans ca...