Sphingosine 1-phosphate receptor 1 (S1P 1 ) is a G protein-coupled receptor (GPCR) for a versatile lysophospholipid mediator sphingosine 1-phosphate (S1P) ( 1, 2 ). S1P levels are high in blood and lymph, but low in the interstitial tissue fl uid, thereby forming a gradient important for immune cell traffi cking ( 3 ). S1P, which is poorly soluble in aqueous solutions, is bound by specifi c chaperones. For example, plasma S1P is bound by albumin ( 4 ) or apoM ( 5 ), a specifi c apolipoprotein found in HDL. The S1P-S1P 1 signaling system is critical for sprouting angiogenesis ( 6-8 ) and vascular permeability ( 2, 9-11 ). In addition, part of the vasoprotective, anti-infl ammatory, and anti-atherosclerotic effects associated with HDL is attributed to its cargo, apoM-S1P ( 12-15 ). The S1P-S1P 1 signaling system also plays an important role in immune cell traffi cking ( 3 ). The gradient of S1P concentration between interstitial fl uids and lymph is a basis that allows lymphocytes to egress from secondary lymphoid organs to the circulation via the chemotactic activity of S1P 1 ( 3, 16 ).Previous studies have accumulated signifi cant functional and structural information on S1P 1 ( 1, 2 ). The Abstract Sphingosine 1-phosphate receptor 1 (S1P 1 ), an abundantly-expressed G protein-coupled receptor which regulates key vascular and immune responses, is a therapeutic target in autoimmune diseases. Fingolimod/Gilenya (FTY720), an oral medication for relapsing-remitting multiple sclerosis, targets S1P 1 receptors on immune and neural cells to suppress neuroinfl ammation. However, suppression of endothelial S1P 1 receptors is associated with cardiac and vascular adverse effects. Here we report the genetic variations of the S1P 1 coding region from exon sequencing of >12,000 individuals and their functional consequences. We conducted functional analyses of 14 nonsynonymous single nucleotide polymorphisms (SNPs) of the S1PR1 gene . One SNP mutant (Arg 120 to Pro) failed to transmit sphingosine 1-phosphate (S1P)-induced intracellular signals such as calcium increase and activation of p44/42 MAPK and Akt. Two other mutants (Ile 45 to Thr and Gly 305 to Cys) showed normal intracellular signals but impaired S1P-induced endocytosis, which made the receptor resistant to FTY720-induced degradation. Another SNP mutant (Arg 13 to Gly) demonstrated protection from coronary artery disease in a high cardiovascular risk population. Individuals with this mutation showed a signifi cantly lower percentage of multi-vessel coronary obstruction in a risk factor-matched case-control study. This study suggests that individual genetic variations of S1P 1 can infl uence receptor function and, therefore, infer differential disease risks and interaction with S1P 1 -targeted therapeutics. -Obinata, H., S. Gutkind, J. Stitham, T. Okuno, T. Yokomizo, J. Hwa, and T. Hla. Individual variation of human S1P 1 coding sequence leads to heterogeneity in receptor function and drug interactions. J. Lipid Res. 2014. 55: 2665-2675.