Fungal peroxygenases
(UPOs) have emerged as oxyfunctionalization
catalysts of tremendous interest in recent years. However, their widespread
use in the field of biocatalysis is still hampered by their challenging
heterologous production, substantially limiting the panel of accessible
enzymes for investigation and enzyme engineering. Building upon previous
work on UPO production in yeast, we have developed a combined promoter
and signal peptide shuffling system for episomal high throughput UPO
production in the industrially relevant, methylotrophic yeast Pichia pastoris. Eleven endogenous and orthologous promoters
were shuffled with a diverse set of 17 signal peptides. Three previously
described UPOs were selected as first test set, leading to the identification
of beneficial promoter/signal peptide combinations for protein production.
We applied the system then successfully to produce two novel UPOs: MfeUPO from Myceliophthora fergusii and MhiUPO from Myceliophthora hinnulea. To
demonstrate the feasibility of the developed system to other enzyme
classes, it was applied for the industrially relevant lipase CalB
and the laccase Mrl2. In total, approximately 3200 transformants of
eight diverse enzymes were screened and the best promoter/signal peptide
combinations studied at various cofeeding, derepression, and induction
conditions. High volumetric production titers were achieved by subsequent
creation of stable integration lines and harnessing orthologous promoters
from Hansenula polymorpha. In most cases promising
yields were also achieved without the addition of methanol under derepressed
conditions. To foster the use of the episomal high throughput promoter/signal
peptide Pichia pastoris system, we made all plasmids
available through Addgene.