DNA microarrays bearing nearly all of the genes of the unicellular cyanobacterium Synechocystis sp PCC 6803 were used to examine the temporal program of gene expression during acclimation from low to high light intensity. A complete pattern is provided of gene expression during acclimation of a photosynthetic organism to changing light intensity. More than 160 responsive genes were identified and classified into distinct sets. Genes involved in light absorption and photochemical reactions were downregulated within 15 min of exposure to high light intensity, whereas those associated with CO 2 fixation and protection from photoinhibition were upregulated. Changes in the expression of genes involved in replication, transcription, and translation, which were induced to support cellular proliferation, occurred later. Several unidentified open reading frames were induced or repressed. The possible involvement of these genes in the acclimation to high light conditions is discussed.
INTRODUCTIONPhotosynthetic organisms must acclimate to changing light intensity in their environment. The acclimation process includes changes in the photosynthetic apparatus, presumably to balance energy input and consumption (Boardman, 1977). If energy supply (light harvesting and electron transport) exceeds its dissipation (by CO 2 fixation and other energy-demanding processes), particularly under high light (HL) conditions, the photosynthetic electron transport components could become relatively reduced. This may result in excess production of reactive oxygen species (ROS) leading to severe damage to many cellular processes (Asada, 1994). Absorption of excess light energy therefore must be avoided by reduction of both antenna size and photosystem content. Furthermore, under HL conditions the capacity for CO 2 fixation increases (Björkman, 1981;Anderson, 1986) and protection from ROS is enhanced (Grace and Logan, 1996).Acclimation from low light (LL) to HL conditions can be divided into short-term and long-term processes (Anderson, 1986;Anderson et al., 1995). Short-term acclimation includes state transitions, protective energy dissipation (Campbell et al., 1998;Niyogi, 1999), changes in the efficiency of energy transfer from the harvesting complex to photosystem II (PSII; Hassidim et al., 1997), and the formation of nonfunctional PSII reaction centers (Chow, 1994;Anderson et al., 1997). These responses occur rather rapidly and usually are completed within several minutes. Conversely, the long-term acclimation to HL is much slower because it involves changes in the composition, function, and structure of the photosynthetic apparatus as well as other photosynthesis-related components. Completion of the long-term processes may take hours or even days.Physiological responses to changing light intensity have been examined extensively Gibson, 1982a, 1982b;Anderson, 1986;Neale and Melis, 1986), and some of the relevant molecular mechanisms have been described (Anderson et al., 1995;Hihara, 1999;Niyogi, 1999). Nevertheless, the mechanisms that ...