Acclimation of the Antarctic sea urchin Sterechinus neumayeri to warmer temperatures involves a modulation of cellular machinery

The Antarctic sea urchin Sterechinus neumayeri (Echinoida;Echinidae) is routinely used as a model organism for Antarctic biology. Here, we present a high-quality genome of S. neumayeri. This chromosomal-level assembly was generated using PacBio long-read sequencing and HiC chromatin conformation capture sequencing. This 885.3 Mb assembly exhibits high contiguity with a scaffold length N50 of 36.7Mb assembled into 20 chromosomal length scaffolds. These putative chromosomes exhibit a high degree of synteny compared to other sea urchin models. We used transcript evidence gene modeling combined with sequence homology to identify 21,638 gene models that capture 97.4% of BUSCO orthologs. Among these, we were able to identify and annotate conserved developmental gene regulatory network orthologs, positioning S. neumayeri as a tractable model for comparative studies on evolution and development.

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Effect of Prolonged Starvation of Nacella concinna, Odontaster validus, and Sterechinus neumayeri on Their Body Composition and the Enrichment of the Aquatic Environment with Nitrogen and Phosphorus

Nędzarek,

Stepanowska

2024

Water

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The seasonal availability of food for Antarctic zoobenthic consumers affects, among other factors, the levels of excreted metabolites that can serve as a source of nitrogen (N) and phosphorus (P) for autotrophs. This study tested the effects of prolonged starvation on N and P excretion by Nacella concinna, Odontaster validus, and Sterechinus neumayeri, as well as changes in their body chemistry. In all animals starved for 65 days, a significant decrease in body protein content was observed (33% for S. neumayeri and approximately 23% for N. concinna and O. validus). Nitrogen excretion rates were higher than phosphorus, with mean values (in µmol N or P h−1 100 g−1) of 1.351 and 0.094 for N. concinna, 0.779 and 0.037 for O. validus, and 0.538 and 0.075 for S. neumayeri, respectively. Ammonium nitrogen accounted for 50% to 69% of total nitrogen, while total reactive phosphorus represented 35% to 42% of total phosphorus. The study confirmed the natural adaptation of zoobenthos to prolonged food scarcity and demonstrated that (i) protein was the primary energy source during starvation, (ii) excretion rates were negatively correlated with invertebrate body size and were higher for N than P, and (iii) the excreted N and P loads may serve as a source of nutrients for autotrophs and act as chemical signals in trophic chemoreception.

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Acclimation of the Antarctic sea urchin Sterechinus neumayeri to warmer temperatures involves a modulation of cellular machinery

Cited by 3 publications

References 42 publications

Analysis of biochemical, genetic, and morphological adaptation focused on metamorphosis from Heliocidaris crassispina based on the transcriptomic and accurate genotyping strategy

Analysis of biochemical, genetic, and morphological adaptation focused on metamorphosis from Heliocidaris crassispina based on the transcriptomic and accurate genotyping strategy

Chromosomal-Level Genome Assembly of the Antarctic Sea Urchin Sterechinus neumayeri: A Model for Antarctic Invertebrate Biology

Effect of Prolonged Starvation of Nacella concinna, Odontaster validus, and Sterechinus neumayeri on Their Body Composition and the Enrichment of the Aquatic Environment with Nitrogen and Phosphorus

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