Nitrogen for all living organisms ultimately comes from atmospheric dinitrogen (N 2 ). Biological nitrogen fixation is a reaction whereby N 2 is reduced to ammonium (NH 3 ) by a special enzymatic system, of which the primary enzyme is the nitrogenase complex. The nitrogenase system is found in various prokaryotes (diazotrophic bacteria or diazotrophs). They can be grouped into two categories: one is the group of free-living nitrogen fixers which inhabit the soil, fresh water and seawater, and the other is a group of bacteria that exhibits a highly efficient nitrogen fixation system in endosymbiotic association with plants. Symbiotic nitrogen fixation in legumes is the prominent representative of the second group. Legume plants form root nodules by symbiosis with a group of soil bacteria collectively termed Rhizobium, in which endosymbiotic rhizobia are capable of fixing N 2 . Nitrogen fixation by the legume-Rhizobium symbiosis accounts for more than 50% of biological nitrogen fixation and has a critical importance in agriculture. Some kinds of symbiotic nitrogen fixers are able to fix nitrogen in their free-living state, and such free-living nitrogen fixing bacteria can reside (not intracellularly) inside the tissues of higher plants. For example, some kinds of endophytic bacteria, which inhabit the intercellular space and/or the vascular cylinders of plants, fix N 2 , and are thought to contribute nitrogen nutrition to these plants. In addition, various free-living nitrogen-fixing bacteria have been identified from the rhizosphere of many plants, and make a loose symbiotic association with those plants. Representatives of nitrogen-fixing microorganisms are shown in Table 3.1.Plant Metabolism and Biotechnology, First Edition. Edited by Hiroshi Ashihara, Alan Crozier, and Atsushi Komamine.