End group-protected linear polyynes of composition Tr*−(CC) n −Tr* (with Tr* representing the super trityl group and n = 2, 4, 6, 8, 10) and tBu−(CC) 6 − tBu (with tBu being the tertiary butyl group) have been studied by laser desorption ionization (LDI) time-of-flight (ToF) mass spectrometry. tBu-terminated polyyne molecules show considerably higher stability during laser activation than Tr*-end-capped polyyne molecules. A key feature is the abundant formation of oligomeric species upon laser activation. Tandem mass spectrometry reveals strong bonding within the oligomers which indicates cross-linking of the former polyynes within the oligomers. The process is more abundantly occurring and less energy demanding than the laser-induced coalescence of C 60 . Cross-linking is more efficient with the smaller end group (tBu), and larger oligomers are formed when the chain length of the polyyne increases, both a result of enhanced interaction of the triple bonds in neighboring chains. The presence of the matrix molecules in matrix-assisted (MA)LDI hinders the polyyne interaction, and oligomer formation is markedly reduced.