A 14-base-pair sequence element present in almost all Drosophia melanogaster heat shock genes has been implicated in the heat inducibility of transcription. The D. melanogaster gene encoding the smallest heat shock protein, hsp22, contains within its 5' flanking sequences three such repeats, two close to the transcription start site and a distally located third one 101 base pairs further upstream. Deletion analyses reveal that the 5' flanking sequences required for full expression of the hsp22 gene extend beyond the distal repeat. Deletion of the furthest upstream repeat results in a five to sixfold reduction of gene expression. The small heat shock genes are transiently expressed in the late third instar larval and early pupal stages without external stimulation. A deletion of 5' flanking sequences to position -194, which includes two nucleotides of the distal heat shock element, has no effect on the developmental expression, whereas removal of an additional 18 nucleotides, including 12 nucleotides of the distal heat shock element, severely reduces developmental expression.The heat shock genes of Drosophila melanogaster are coordinately induced as a response to the exposure to certain chemicals or high temperatures as well as during recovery from anoxia (for a recent review, see reference 33). All but one of these genes contain within their 5' flanking regions one to four copies of the 14-base-pair (bp) sequence element, the heat shock element (HSE) CTnGAAnTTCnAG (5,26,34,35). All of the four HSEs which are located upstream of the hsp7O gene transcription start site specifically associate with the heat shock transcription factor (HSTF) in vitro (31, 46). The two contiguous HSEs closest to the TATA box bind HSTF cooperatively (46) and are indispensable and sufficient for full induction of in vitromanipulated hsp7O genes after reintroduction into the D. melanagaster genome, whereas the two HSEs located further upstream can be deleted without detectably affecting the heat inducibility of the genes (7).The gene encoding the smallest heat shock protein, hsp22, has three HSEs upstream of the transcribed region, all of which fit the consensus sequence in 8 out of 10 positions (see Fig. 1). Two of them are closely spaced and only 26 and 46 bp from the TATA box, thus at relative positions similar to those of the two indispensable HSEs of the hsp7O genes (see Fig. 7). A third element is found 147 bp upstream of the TATA box, again positioned like one of the two dispensable HSEs in the hsp7O genes. To compare the sequence requirement for the full expression of the hsp22 and hsp7O genes during heat shock we truncated the 5' nontranscribed region of the hsp22 gene to various extents and reintroduced the manipulated genes into a fly strain which synthesizes an electrophoretic variant of hsp22 (hsp22v). Direct comparison of the amount of protein encoded by the reintroduced and the endogenous genes reveals that full gene expression requires sequences that include all three HSEs.The small heat shock genes are induced in the lat...