The adenosine analog 5,6-dichloro-1-3-D-ribofuranosylbenzimidazole (DRB) and its mono-and triphosphate derivatives inhibit RNA polymerase II-specific transcription in an extract ofwhole HeLa cells. The analog does not inhibit RNA polymerase m-specific adenovirus VA RNA transcription in the whole cell extract. With purified RNA polymerase II under nonspecific transcription conditions, no effect ofDRB could be detected. DRB is equally effective in inhibiting in vitro transcription from several of the adenovirus promoters and the human e-globin gene. The inhibitory effects are in the order DRB > DRB monophosphate > DRB triphosphate. Thus DRB acts in vitro presumably on systems in which specific RNA polymerase H initiation of transcription occurs and with no detectable effect on premature termination. This will provide a suitable model for study of the molecular mechanism of action of DRB on transcription.The nucleotide analog 5,6-dichloro-1-,B3D-ribofuranosylbenzimidazole (DRB) is a widely used inhibitor of mRNA synthesis in eukaryotic cells (for review, see ref. 1). The action of DRB is selective for RNA polymerase II transcripts; RNA polymerase III 5S and tRNA-specific transcripts and the rates of RNA polymerase I-mediated rRNA synthesis are all not affected (1). Initial reports (2, 3) indicated that DRB acted at or very close to the site of initiation of transcription, on the basis of incorporation of [3H]uridine into specific-size mRNAs of Balbiani rings in Chironomus (2) and of the labeling kinetics of HeLa cell mRNA precursors (3). The effect of adding DRB to HeLa cells is very rapid (<5 min). Even in the presence of DRB, however, 30% of the HeLa cell large nuclear RNA can be labeled (3-5), but the role of this RNA, which is not transported to the cytoplasm, remains unclear. By contrast, short, capped RNAs transcribed by RNA polymerase II continue to be made in DRBtreated HeLa cells (4, 6).Synthesis of specific low molecular weight DRB-resistant RNAs was also described for the globin gene of Friend erythroleukemia cells (7), adenovirus-specific RNA in infected HeLa cells (8, 9), and simian virus 40-specific RNA in infected monkey cells (10). In the case of the adenovirus major late promoter RNA, these short RNA species are initiated at the same site as the viral mRNA precursor transcripts of normal length and are capped (11). Some of these low molecular weight RNAs therefore could represent prematurely terminated mRNA precursors.DRB has also been shown to inhibit the methylation of 5'-end caps of mRNAs larger than 18 S without affecting the methylation of shorter mRNA-like molecules (5). Transcription of the nuclear low molecular weight RNAs with trimethylated caps shows DRB sensitivity identical to that of the large mRNA precursor RNAs (5). Thus, transcription of short or prematurely terminated capped mRNA-like molecules seems to be resistant to DRB. It has been suggested (6) that DRB acts to enhance premature termination, but from the evidence presented it is difficult to establish whether this phen...