Mouse-tracking is regarded as a powerful technique to investigate latent cognitive and emotional states. However, drawing inferences from this manifold data source carries the risk of several pitfalls, especially when using aggregated data rather than single-trial trajectories. Researchers might reach wrong conclusions because averages lump together two distinct contributions that speak towards fundamentally different mechanisms underlying between-condition differences: influences from online-processing during action execution and influences from incomplete decision processes. Here, we propose a simple method to assess these factors, thus allowing us to probe whether process-pure interpretations are appropriate. By applying this method to data from 12 published experiments on ideomotor action control, we show that the interpretation of previous results changes when dissociating online processing from decision and initiation errors. Researchers using mouse-tracking to investigate cognition and emotion are therefore well advised to conduct detailed trial-by-trial analyses, particularly when they test for direct leakage of ongoing processing into movement trajectories.