Silicon (Si) is a nonessential element for plant growth, but it influences the tolerance to biotic and abiotic stresses in many plant species. Most research about the uptake and beneficial effects of Si in plants has been carried out on monocotyledonous species, Si-accumulating plants. Little attention has been paid to woody crops, characterized as low-Si-accumulating plants. In this sense, available information about Si nutrition in olive trees is scarce. Therefore, this work aimed to study the effect of Si application on the uptake, accumulation, and organ distribution of Si in young olive plants by analyzing the influence of the dose, the method of application, and the cultivar. Three experiments were conducted under shade-house conditions with mist-rooted ‘Arbequina’ and ‘Picual’. The treatments consisted of different Si doses, ranging from 0 to 20 mg·L−1, depending on the experiment, applied by foliar sprays or through the irrigation water. Choline-stabilized orthosilicic acid (H4O4Si) was used as the source of Si. Results indicated that after 120 days of Si treatments, this element was accumulated in major proportion in the roots, followed by the leaves and the shoot of the plants. Si organ concentration increased according to the doses applied, independently of the olive cultivar and the method of Si application. Differences in leaf Si accumulation between treated and control plants were evident 60 days after its application. The dose of 20 mg·L−1 was the most effective to increase Si level in leaves under the trial conditions. Si is recommended to be applied periodically to ensure its accumulation in growing leaves.