Expression of the porin genes of Escherichia coli is regulated in part by the osmolarity of the growth medium. The process is controlled by the histidine kinase EnvZ and the response regulator OmpR. We have previously shown that phosphorylation of OmpR increases its affinity for the upstream regulatory regions of ompF and ompC. We now report that, in the presence of DNA, there is a dramatic stimulation in the level of phospho-OmpR. This effect is independent of the source of phosphorylation, i.e., stimulation of phosphorylation is observed with a small phosphorylating agent such as acetyl phosphate or with protein-catalyzed phosphorylation by the kinase EnvZ. The dephosphorylation rate of phospho-OmpR is affected only slightly by the presence of DNA; thus, the increased level is largely caused by an increased rate of phosphorylation. Stimulation of phosphorylation requires specific binding of DNA by OmpR. Occupancy of the DNA binding domain exposes a trypsin cleavage site in the linker, which connects the phosphorylation domain with the DNA binding domain. Our results indicate that when DNA binds in the C terminus, it enhances phosphorylation in the N terminus, and the linker undergoes a conformational change. A generalized mechanism involving a four-state model for response regulators is proposed.winged helix-turn-helix ͉ response regulator ͉ porin regulation ͉ two-component regulatory system ͉ transcriptional activator A ll organisms must communicate with their environment to survive. Two-component regulatory systems have emerged as a paradigm for adaptive responses. In its simplest form, a two-component system contains a sensor, a histidine kinase, and a response regulator, often a transcriptional activator. Changes in the environment result in phosphorylation of the sensor followed by transphosphorylation onto the response regulator. Adaptive responses controlled by two-component regulatory systems are diverse and include chemotaxis, fruit ripening, sporulation, and virulence gene expression in numerous pathogens (see ref. 1).The outer membrane proteins OmpF and OmpC in Escherichia coli are regulated in response to changes in the osmolarity of the medium (see ref. 2 for a recent review). At low osmolarity, OmpF predominates; at high osmolarity, ompF is repressed, and OmpC is the major porin in the outer membrane (3). This process is controlled by the EnvZ͞OmpR two-component regulatory system (4). EnvZ is a histidine kinase located in the inner membrane, OmpR is a cytoplasmic DNA binding protein (5). The two proteins communicate via a series of phosphorylation and phosphotransfer reactions. EnvZ senses the osmotic environment and is autophosphorylated from intracellular ATP at His-243 (6, 7). EnvZ-P phosphorylates OmpR at , and phospho-OmpR (OmpR-P) binds to the upstream sites of the porin genes to regulate their expression (9-12). EnvZ also stimulates the dephosphorylation of OmpR-P, thereby controlling the concentration of cellular OmpR-P (11, 13). Phosphorylation of OmpR results in an increase in its affin...