2020
DOI: 10.26434/chemrxiv.11678400.v1
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Active Learning of Many-Body Configuration Space: Application to the Cs+–water MB-nrg Potential Energy Function as a Case Study

Abstract: <div> <div> <div> <p>The efficient selection of representative configurations that are used in high-level electronic structure calculations needed for the development of many-body molecular models poses a challenge to current data-driven approaches to molecular simulations. Here, we introduce an active learning (AL) framework for generating training sets corresponding to individual many-body contributions to the energy of a N-body system, which are required for the developme… Show more

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Cited by 9 publications
(9 citation statements)
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“…In the context of quantum chemistry, many applications have focused on the use atom-or geometry-specific feature representations and kernel-based [1][2][3][4][5][6][7][8][9] or neural-network (NN) ML architectures. [10][11][12][13][14][15][16][17][18][19][20][21][22][23] Recent studies focus on the featurization of molecules in abstracted representations -such as quantum mechanical properties obtained from low-cost electronic structure calculations [24][25][26][27][28] -and the utilization of novel graphbased neural network [29][30][31][32][33][34][35] techniques to improve transferability and learning efficiency.…”
Section: Introductionmentioning
confidence: 99%
“…In the context of quantum chemistry, many applications have focused on the use atom-or geometry-specific feature representations and kernel-based [1][2][3][4][5][6][7][8][9] or neural-network (NN) ML architectures. [10][11][12][13][14][15][16][17][18][19][20][21][22][23] Recent studies focus on the featurization of molecules in abstracted representations -such as quantum mechanical properties obtained from low-cost electronic structure calculations [24][25][26][27][28] -and the utilization of novel graphbased neural network [29][30][31][32][33][34][35] techniques to improve transferability and learning efficiency.…”
Section: Introductionmentioning
confidence: 99%
“…Future releases of MB-Fit will include an active-learning approach to training set reduction which was shown to be effective in the development of representative training sets for ion-water MB-nrg PEFs. 107,119 C. Quantum mechanical calculations MB-Fit includes an interface that drives QM calculations in order to optimize molecular structures, perform normal-mode analysis, and compute molecular properties (e.g., atomic charges, atomic polarizabilities, and dispersion coefficients). MB-Fit supports running QM calculations locally or, alternatively, provides a job manager that generates short Python scripts for each nB energy calculation which can then be executed on HPC platforms or in a cloud or grid computing environment like Open Science Grid.…”
Section: B Training and Test Setsmentioning
confidence: 99%
“…Classical molecule property prediction methods combined handcrafted features generally based on force field methods at the atom level (De et al 2016;Faber et al 2017;Christensen et al 2020;Dick and Fernandez-Serra 2020) or molecular level (Rupp et al 2012;Hansen et al 2013;Von Lilienfeld et al 2015;Huang and Von Lilienfeld 2016), integrated into various machine learning models such as Kernel methods (Ramakrishnan et al 2015;Christensen and von Lilienfeld 2019;Zhai et al 2020), Gaussian processes (Bartók et al 2010;Chmiela et al 2017) or Neural networks (Smith, Isayev, and Roitberg 2017;Lubbers, Smith, and Barros 2018;Kearnes et al 2016;Zhang et al 2018;Wu et al 2018;Schütt et al 2017). These methods have recently been superseded by end-toend neural networks, alleviating the need for handcrafted signatures.…”
Section: Related Workmentioning
confidence: 99%