The postdevelopmental basis of cellular identity and the unique cellular output of a particular neuron type are of particular interest in the nervous system because a detailed understanding of circuits responsible for complex processes in the brain is impeded by the often ambiguous classification of neurons in these circuits. Neurons have been classified by morphological, electrophysiological, and neurochemical techniques. More recently, molecular approaches, particularly microarray, have been applied to the question of neuronal identity. With the realization that proteins expressed exclusively in only one type of neuron are rare, expression profiles obtained from neuronal subtypes are analyzed to search for diagnostic patterns of gene expression. However, this expression profiling hinges on one critical and implicit assumption: that neurons of the same type in different animals achieve their conserved functional output via conserved levels and quantitative relationships of gene expression. Here we exploit the unambiguously identifiable neurons in the crab stomatogastric ganglion to investigate the precise quantitative expression profiling of neurons at the level of single-cell ion channel expression. By measuring absolute mRNA levels of six different channels in the same individually identified neurons, we demonstrate that not only do individual cell types possess highly variable levels of channel expression but that this variability is constrained by unique patterns of correlated channel expression.ion channels Í neuronal identity Í plasticity Í stomatogastric Í quantitative PCR A nimals contain many different kinds of neurons that can be superficially described in terms of their anatomical forms, the patterns of connections they make, the neurotransmitters they release, and their electrophysiological properties. In small invertebrate nervous systems, it is relatively easy to identify neurons unambiguously by using one or more of the above attributes. Likewise, certain vertebrate neurons, such as the Mauthner cell in fish and amphibians (1), are unambiguously identifiable, as a function of size and location. In large vertebrate brains with many neurons with similar properties, it can be quite difficult to identify neurons unambiguously, which has significantly impeded efforts to understand the neuronal circuits in larger brains. Consequently, there are now major efforts under way to use a combination of molecular, anatomical, and physiological methods to identify neurons in vertebrate brains and spinal cords (2-4). Nonetheless, it is not yet apparent which combinations of attributes are adequate to define neuronal identity.There is a large literature on the expression of various transcription factors and other genes in determining neuronal identity during development (5-8). However, characterizing the molecular processes that determine the lineage of a cell may not provide sufficient insight into the molecular markers expressed by those neurons many years later, as they function in the adult brain.The electrop...