c Streptogramin antibiotics are divided into types A and B, which in combination can act synergistically. We compared the molecular interactions of the streptogramin combinations Synercid (type A, dalfopristin; type B, quinupristin) and NXL 103 (type A, flopristin; type B, linopristin) with the Escherichia coli 70S ribosome by X-ray crystallography. We further analyzed the activity of the streptogramin components individually and in combination. The streptogramin A and B components in Synercid and NXL 103 exhibit synergistic antimicrobial activity against certain pathogenic bacteria. However, in transcription-coupled translation assays, only combinations that include dalfopristin, the streptogramin A component of Synercid, show synergy. Notably, the diethylaminoethylsulfonyl group in dalfopristin reduces its activity but is the basis for synergy in transcription-coupled translation assays before its rapid hydrolysis from the depsipeptide core. Replacement of the diethylaminoethylsulfonyl group in dalfopristin by a nonhydrolyzable group may therefore be beneficial for synergy. The absence of general streptogramin synergy in transcription-coupled translation assays suggests that the synergistic antimicrobial activity of streptogramins can occur independently of the effects of streptogramin on translation.
Bacterial infections caused by antibiotic-resistant clinical isolates are an emerging medical threat. Based on conservative assumptions made by the Centers for Disease Control and Prevention (CDC), at least two million people acquire life-threatening infections caused by antibiotic-resistant bacterial strains in the United States every year, resulting in 23,000 deaths. Despite the constant need for new antibiotics, the number of new antibiotics approved by the FDA has significantly decreased over the last decade (1, 2). Antibiotics that target the bacterial ribosome specifically interfere with key processes of protein synthesis, such as mRNA decoding and peptide bond formation (3). The streptogramin antibiotics produced by some Streptomyces strains inhibit protein synthesis by interfering with peptide bond formation and by blocking the peptide exit tunnel in the large (50S) ribosomal subunit, which prevents the extension of the polypeptide chain (Fig. 1A). Streptogramin antibiotics are depsipeptides consisting of two chemically distinct types, a smaller type A and a larger type B. Streptogramin antibiotics have been used as growth promoters in food-producing animals for Ͼ50 years (4) but only began to be used to treat human infections with the approval of dalfopristinquinupristin (Synercid), an injectable pair of streptogramin antibiotics (5), in 1999.To counteract the spread of methicillin-resistant Staphylococcus aureus (MRSA) in hospitals in the 1990s, Synercid was developed as a 70:30 (wt/wt) mixture of dalfopristin to quinupristin. Synercid was approved in 1999 for the treatment of life-threatening infections caused by vancomycin-resistant Enterococcus faecium (VREF) and complicated skin and skin structure i...