Enzymatic activities for digestion of proteins and carbohydrates were compared among three organs of the digestive system of Pimelodus maculatus in two reservoirs with different trophic conditions during the winter of 2006. The aim was to test the hypothesis that enzymatic activity for the digestion of proteins and carbohydrates differed among organs and that such activities differ between the trophic state of the environment. Enzymatic activities were determined through the assays of specificity for trypsin, chymotrypsin and β-glucosidase enzymes. The intestine had higher trypsin-like enzymatic activities compared to the stomach and liver. The highest β-glucosidase activity was found in the liver compared to the stomach and intestine in the oligotrophic reservoir only. Overall, enzymatic activity did not differ between the eutrophic and oligotrophic reservoirs, although the intestinal chymotrypsin was comparatively higher in the eutrophic reservoir and the hepatic β-glucosidase was higher in the oligotrophicreservoir. These findings indicated that most digestive activity occurred in the intestine for P. maculatus, which was probably related to its omnivorous/carnivorous feeding habits. The highest proteolytic activity in the intestine was expected for most fishes, but the high hepatic β-glucosidase in the oligotrophic reservoir was unexpected. The hepatic β-glucosidase as well as the intestinal chymotrypsin-like activity could be considered as the candidates for biomarkers of environmental quality.