(1) Background: Enhancing repeated sprint ability (RSA) is critical to soccer performance. Post-activation performance enhancement (PAPE) protocols, particularly those utilizing heavy resistance preloading, have shown promise in improving RSA. Yet, the optimal preloading intensity for amateur players is still unknown. This study investigated the effects of two PAPE protocols using different preloading intensities (85% and 90% of 1 RM back squat) on RSA. (2) Methods: A double-blind, randomized, two-period crossover design was used, and 18 amateur male players were included in this study. RSA was assessed using a 6 × 35 m sprint protocol with 10 s rest intervals (RAST). (3) Results: While the main effect of time significantly (p = 0.01, η2 = 0.71) influenced performance decline across all groups, there was no significant (p = 0.65, η2 = 0.01) interaction between time and condition. Individual responses to PAPE varied, highlighting the importance of individual differences. Interestingly, the BS85% group exhibited a less pronounced decline in performance compared to the control group, while the BS90% group only showed significant differences in three sprint levels. (4) Conclusions: Our findings suggest that a lower preload of 85% of 1 RM may be as adequate as a higher preload of 90% of 1 RM in enhancing RSA in amateur soccer players. These results may indicate a potential fatigue-delaying effect of PAPE protocols and emphasize the importance of individualized approaches for optimizing PAPE strategies.