“…The number of mature individuals is estimated to be between 2000 and 5000 in the Kruger National Park (Ferreira et al, 2013). The geographical separation of the three national parks from which the warthogs were sampled, could have created small and fragmented subpopulations leading to escalated F IS values (Lamsyah et al, 2009) rs80854994 4 106,719,032 BCL2L15 Mastitis (Chen et al, 2015) Villages and DUR rs81282695 6 94,442,844 POU3F1 Neurobehavioral functioning (Eusebi et al, 2018) rs81282695 6 94442844 FHL3 Carcass traits (Zuo et al, 2004(Zuo et al, , 2007 Villages and KOL rs81430450 11 24,063,007 DNAJC15 Feeding efficiency (Reyer et al, 2017a) rs81430450 11 24,063,007 EPSTI1 Fertility traits (Gaddis et al, 2016), fat deposition (Zhang et al, 2018) SAL&LWT (Luo et al, 2012); carcass weight (Kang et al, 2013) Villages and WBO rs81244815 2 50,167,007 SWAP70 Disease resistance (Ma et al, 2011;Zhang et al, 2018) rs81244815 2 50,167,007 SBF2 Fertility (Zhang et al, 2014); immune function (Ibeagha-Awemu et al, 2016) rs81401075 8 73,841,435 FRAS1 Sow reproductive traits (Fischer et al, 2015), feed efficiency (Messad et al, 2019) rs81401075 8 73,841,435 NPY2R Obesity (Siddiq et al, 2007;Hunt et al, 2011) Villages (Smith et al, 2019); body width in gilts and sows (Rothschild, 2010), body weight traits (Borowska et al, 2017), altitude (Zhang et al, 2014) rs81478390 13 53,707,241 RYBP Body conformation traits -body weight, body length, body height, and chest circumference (Zhou et al, 2016) rs81330369 9 7,449,894 FCHSD2 Milk production traits (Kemper et al, 2015) rs80975991 7 33,481,446 ZFAND3 Growth and carcass quality traits (Li and Kim, 2015) rs80855522 4 11,0552,282 GNAI3 Heat tolerance (Berihulay et al, 2019) rs80988392 1 213,780,848 PTPRD Meat quality (Raschetti et al, 2013) due to Wahlund effect. As expected, we found that the village pig populations of South Africa had high inbreeding values compared with other popul...…”