The annual global production of chickens exceeds 25 billion birds, and they are often housed in very large groups, numbering thousands. Distress calling triggered by various sources of stress has been suggested as an “iceberg indicator” of chicken welfare. However, to date, the identification of distress calls largely relies on manual annotations, which is very labour-intensive and time-consuming. Thus, a novel light-VGG11 was developed to automatically identify chicken distress calls using recordings (3,363 distress calls and 1,973 natural barn sounds) collected on intensive chicken farms. The light-VGG11 was modified from VGG11 with a significantly smaller size in parameters (9.3 million vs 128 million) and 55.88% faster detection speed while displaying comparable performance, i.e., precision (94.58%), recall (94.89%), F1-score (94.73%), and accuracy (95.07%), therefore more useful for model deployment in practice. To further improve the light-VGG11’s performance, we investigated the impacts of different data augmentation techniques (i.e., time masking, frequency masking, mixed spectrograms of the same class, and Gaussian noise) and found that they could improve distress calls detection by up to 1.52%. In terms of precision livestock farming, our research opens new opportunities for developing technologies used to monitor the output of distress calls in large, commercial chicken flocks.