A short open reading frame named the "U exon," located on the adenovirus (Ad) l-strand (for leftward transcription) between the early E3 region and the fiber gene, is conserved in mastadenoviruses. We have observed that Ad5 mutants with large deletions in E3 that infringe on the U exon display a mild growth defect, as well as an aberrant Ad E2 DNA-binding protein ( An open reading frame (ORF) named the "U exon," located on the l strand (for leftward transcription) between the early E3 region and the fiber gene, was first identified after the sequencing of Ad40 (9). Davison et al. (9) reported that the U exon that is conserved in mastadenoviruses would encode just over 50 amino acids (aa) for most mastadenoviruses and might encode the N terminus of a larger protein. U exon sequences are conserved within each of the four Ad genera but not between genera (10). Davison et al. (10) suggested that the U exon is an ancient feature in adenoviruses (Ads; all Ad genera genomes encode capsid proteins and the E2 proteins within the central region of the Ad genome; the U exon is encoded within this region).In our work with a number of Ad E3 deletion mutants, we noted that mutants with deletions extending into the U exon have a mild growth defect and exhibit an altered Ad DNA-binding protein (DBP) (also known as E2 72K protein) intranuclear localization pattern when analyzed by indirect immunofluorescence. Reconstruction of the U exon DNA sequence reversed the phenotype of these mutants. Polyclonal and monoclonal antibodies were generated against peptides predicted from the putative U exon protein (UXP) ORF. We describe here the identification and characterization of UXP.
MATERIALS AND METHODS
Cell lines and adenoviruses. A549 cells (American Type Culture Collection[ATCC], Manassas, VA), HEK293 cells (Microbix, Toronto, Ontario, Canada), 21f1 cells (HeLa cells stably expressing DBP) (6), and A549E1 cells (A549 cells stably transfected with E1 sequences [bp 552 to 4090] under control of a mouse mammary tumor virus promoter; obtained from Genetic Therapy, Inc., Rockville, MD) were grown in Dulbecco modified Eagle medium (DMEM) with 10% fetal bovine serum (FBS). HEL299 cells (human diploid embryonic lung cells; ATCC) were grown in DMEM with 10% FBS supplemented with nonessential amino acids and sodium pyruvate (1 mM). KB suspension culture cells were grown in Joklik's suspension culture medium containing 5% horse serum. Wildtype viruses used were Ad5 (ATCC VR-5), Ad1 (ATCC 1078-VR), Ad2, and Ad6 (ATCC 1083-VR). The Ad5-derived mutants used were dl327 (16), VRX-006, VRX-007 (13), VRX-021 (see below), dl7000 (42), and dl7001 (17, 42). The Ad E3 mutants dl722 (⌬12.5K) and dl762 (⌬14.7K) (5) were also used. Figure 1A is a schematic of the E3 genes present in these mutants, and Fig. 1B shows the U exon sequence present in these mutants.Construction of VRX-006 and VRX-021. The construction of mutants VRX-006 and VRX-007 has been described (13). In VRX-006 all E3 sequences between the L4 poly(A) site and a site (bp 30883) downstream ...