A model for the protracted (30-day) colonization of smooth surfaces by Streptococcus gordonii that incorporates the nutrient flux that occurs in the oral cavity was developed. This model was used to characterize the biphasic expansion of the adherent bacterial population, which corresponded with the emergence of higherorder architectures characteristic of biofilms. Biofilm formation by S. gordonii was observed to be influenced by the presence of simple sugars including sucrose, glucose, and fructose. Real-time PCR was used to quantify changes in expression of S. gordonii genes known or thought to be involved in biofilm formation. Morphological changes were accompanied by a significant shift in gene expression patterns. The majority of S. gordonii genes examined were observed to be downregulated in the biofilm phase. Genes found to be upregulated in the biofilm state were observed to encode products related to environmental sensing and signaling.Tooth surfaces are persistently colonized by a complex but highly organized biota termed dental plaque, a microbial biofilm with the capacity to adapt to, and to endure, cyclic variation in nutrient availability as well as harsh mechanical and biological forces targeted at its containment and removal. Streptococcus gordonii is among the pioneering species to colonize a tooth surface (29,30,34,39). Binding of these organisms to the tooth enamel creates a template for the subsequent attachment of other bacteria in establishment of the complex oral biofilm (20, 22). As succeeding layers of different bacterial species attach to the plaque, new binding templates and nutritional microenvironments are formed, which may ultimately favor the attachment and residence of periodontal pathogens (6). The net effect is the establishment of an ordered community of heterogeneous microbial species, with each member playing a role in maintaining the vitality and structure of plaque. A key element in the formation and stability of the plaque biofilm, therefore, is the persistent colonization of the smooth surface of the tooth at the base of this complex community.Several studies have now demonstrated that cells existing in the biofilm state have phenotypic characteristics distinct from those of their planktonic counterparts, with significant changes in the patterns of gene expression (9, 45). This differential expression appears to be governed by communication between bacteria of the same or other species, in addition to cues emanating from the host and the environment (23). Specific intercellular communication mediated by N-(3-oxododecanoyl)-L-homoserine lactone has been shown to be central to the differentiation of the biofilm architecture by Pseudomonas aeruginosa (11).Little is known of the physiologic changes that accompany persistent colonization of the tooth surface by pioneering species in the formation of the dental plaque biofilm. It was therefore of interest to develop a model of protracted smoothsurface colonization with cyclic variation in nutrient availability as a first approx...