It was found that an extra exon exists in the first intron of glutamine synthetase gene, generated by means of alternative splicing (Shin, D., Park, S., and Park, C. (2003) Biochem. J. 374, 175-184). Inclusion of this exon decreased the translation of glutamine synthetase (GS) in human, dog, and mouse. When translated in vitro with the canine GS transcript containing the exon, we obtained two different species of GS enzymes. Besides the known 45-kDa protein, the extended form of GS was identified with additional 40 amino acids on its N-terminal end. An upstream ATG in the extra exon served as a translation initiator for the long form of GS. When the long transcript was translated in vivo in animal cells, only the long GS was expressed. On the other hand, the long GS is less predominant relative to the short one in canine tissues including brain and liver. Subcellular fractionation of canine brain revealed that the long GS is present in all cellular compartments as is the short one, which is consistent with fluorescence microscopy data obtained with green fluorescent protein fused to GS. The short (SGS) and long (LGS) forms of canine GS were purified in Escherichia coli and shown to have similar K m values for L-glutamate and hydroxylamine. However, the K m values for ATP were slightly altered, 1.3 and 1.9 mM for the short and long GSs, respectively. The K i s for L-methionine-S-sulfoximine (MSOX), a highly potent ATP-dependent inactivator of GS, were considerably different such that the values are 0.067 and 0.124 mM for the short and long forms, respectively. When the intrinsic fluorescences of tryptophans were monitored upon bindings of chloride and metal ions without any effect on the oligomeric state, the pattern of quenching in LGS was significantly different from that of SGS. Taken together, the N-terminal extension in the long isoform of GS induces a conformational change of core enzyme, leading to a change in affinity to its substrates as well as in the effector-induced conformational alterations.Glutamine synthetase (GS 1 ; EC 6.3.1.2; L-glutamate ammonia ligase) is an enzyme that catalyzes the ATP-dependent conversion of glutamate and ammonia into glutamine, and thus plays a critical role in eliminating the excitotoxic glutamate in animal brains (1). The expression of eukaryotic GS is regulated at transcriptional and post-transcriptional levels and becomes unstable with oxidation mediated by metal or free radical peptides, generated from a fragmentation of -amyloid, and by growth hormone or glutamine (2).The mammalian GS protein has been reported to form an eight-subunit oligomer (3) with unknown three-dimensional structure. The bindings of chloride and manganese/magnesium ions to allosteric and activator sites of GS, respectively, cause changes in GS conformation, without affecting its oligomerization (4). As an essential trace metal in vivo, the manganese ion is mostly (ϳ80%) bound to GS in astrocytes (5), although its concentration is variable in other mammalian tissues. Magnesium is also bound to m...