The fluxes of metal cations and isotopes released by weathering of silicate rocks are crucial and a prerequisite for constraining geochemical fluxes to rivers and oceans. This study presents mineral and elemental compositions along with 87Sr/86Sr and δ88Sr data from a basaltic weathering regolith on Hainan Island, South China to elucidate Sr isotope fractionation and weathering fluxes. The 87Sr/86Sr ratios vary from 0.703936 to 0.706338 as a result of differential weathering of the minerals. δ88Sr values in the weathering regolith range from −0.29 to 0.37‰, with the majority of the weathering regolith having lower δ88Sr values than the parent rock. Sr is leached into the soil solution during plagioclase decomposition, while 86Sr is preferentially adsorbed on the surface of secondary minerals. As weathering progresses, smectite decomposes and kaolinite desorbs under weakly acidic conditions, releasing the previously adsorbed 86Sr into the soil solution. The differential weathering of kaolinite and smectite controls the δ88Sr values of the weathering regolith, with pH being an important determinant of isotope fractionation. Furthermore, Sr elemental fluxes (SrFlux) and Sr isotopic fluxes (δ88SrFlux) of this weathering regolith were calculated using a mass balance model, yielding mean values of 0.20 (mg cm−3 Myr−1) and 0.052 (‰ (mg cm−3 Myr−1)), respectively. The δ88SrFlux exhibits a nonlinear positive correlation with the Chemical Index of Alteration (CIA), indicating that enhanced weathering leads to significant stable Sr isotope fractionation at CIA values below 95%. Our research promotes the understanding of Sr recycling and the fractionation behavior of stable Sr isotopes during consecutive weathering.