In wind turbine systems, the state of the generator is always disturbed by various unknown perturbances, which leads to system instability and inaccurate state estimation. In this paper, an intermediate-variable-based distributed fusion estimation method is proposed for the state estimation problem in wind turbine systems. By constructing an augmented state error system and using the idea of bounded recursive optimization, the local estimators and distributed fusion criterion are designed, which can be used to estimate the disturbance signals and system states. Then, the local estimator gains and the distributed weighting fusion matrices are obtained by solving the established convex optimization problems. Furthermore, a compensation strategy is designed by using the estimated disturbance signals, which can potentially reduce the influence of the disturbance signals on the system state. Finally, a numerical simulation is provided to show that the proposed method can effectively improve the accuracy of the estimation of the wind turbine state and disturbance, and the superiority of the proposed method is illustrated as a comparison to the Kalman fusion method.