In this report, we present a clinical case of chronic aortic valve endocarditis caused by Enterococcus faecalis small-colony variants (SCVs), with ensuing characterization of the SCV phenotype in comparison to the clonally related normal phenotype with respect to alterations in microscopic and ultrastructural morphology, growth behavior, and metabolic pathways. In contrast to the normal phenotype, light and electron microscopy of the Enterococcus SCVs demonstrated the presence of heterogeneous cells of different sizes with aberrant shapes. Furthermore, SCVs showed excessive production of an intercellular substance and alterations in cell division displayed by a thick, coarse cell wall and incomplete, branched, and multiple cross walls without obvious cell separation. In addition, empty "ghost" cells were visible. In growth experiments, SCVs displayed an extended lag phase with delayed entrance into the stationary phase. Interestingly, SCV cells growing under aerobic conditions did not attain the growth and viability of the normal phenotype or those of SCVs growing under microaerobic conditions, suggesting impaired growth behavior and enhanced vulnerability in the presence of oxygen. By metabolite analysis, SCVs failed to produce significant amounts of acetate or lactate under aerobic growth conditions but were able to produce lactate under microaerobic growth conditions, implicating the induction of a fermentative metabolism. In conclusion, the observed structural alterations and changes in the cellular growth and metabolic pathways facilitated the survival of Enterococcus SCVs under microaerobic conditions in vitro and thus presumably in vivo during endocarditis.Small-colony variants (SCVs) constitute a slow-growing subpopulation of bacteria with distinctive phenotypic and pathogenic characteristics. Since their first description in 1910, SCVs have been described in a wide range of gram-positive and gram-negative bacterial species, including Staphylococcus aureus, Staphylococcus epidermidis, Escherichia coli, Salmonella enterica, Pseudomonas aeruginosa, and Burkholderia cepacia (23). Generally, SCVs display a small colony size, a low growth rate, and atypical colony morphology (16). Biochemical characteristics of SCVs include a deficiency in electron transport or in thymidine biosynthesis (4, 23). SCVs are specialized for intracellular persistence in host cells and have been shown to be associated with persistent and recurrent infections, such as osteomyelitis, arthritis, abscesses, and respiratory infections, in humans (23). Reduced susceptibility to antimicrobial substances relative to that of their normal counterparts (26), which are often isolated simultaneously, restrict the therapeutic options for SCV infections. While SCVs of staphylococci, especially those of S. aureus, are intensively studied for their morphological, ultrastructural, metabolic, and growth characteristics (3,4,(15)(16)(17)22), little is known about the SCVs of Enterococcus species. Their occurrence in a patient with endocarditis (13) an...