Crops, as the basic source of essential substances and nutrients, do not always contain sufficient amounts of these essential nutrients to meet dietary requirements. In this review paper, we discussed the effects of fertilization and other agronomic measures on the nutritional quality of cereal, oilseed and protein crops, tuber plants and vegetables. Research indicates that application of N, P, K and S fertilizers generally increases crop yield as well as nutritional quality. For example, fertilizer increased protein concentration in cereals and pulses, oil concentration in oilseed crops, starch concentration in tubers, and concentration of essential amino acids and vitamins in vegetables. However, excessive fertilizer application, especially N fertilizer, can result in undesirable changes such as increases in nitrate, titratable acidity and acid to sugar ratio, while decreasing the concentration of vitamin C, soluble sugar, soluble solids, and Mg and Ca in some crops. Other agronomic measures, such as tillage and crop rotation, organic farming, soil moisture management, and crop breeding and genetic engineering can also have a large effect on food crop quality, though the potential benefits of these measures for improving crop quality has not been fully exploited. Research literature on this subject suggests that more information is needed in order to achieve an increase in the concentration of essential microelements, prevent accumulation of toxic levels of elements such as Cu, Mo, Zn, Ni, Se and nitrate, and other dangerous or toxic substances and elements in crops.