Fish are known to have two distinct classes of aryl hydrocarbon receptors, and their roles in mediating xenobiotic toxicity remain unclear. In this study, we have identified and characterized a cDNA tentatively named zebrafish AHR1 (zfAHR1). Analysis of the deduced amino acid sequence reveals that the protein is distinct from zfAHR2 and is more closely related to the mammalian aryl hydrocarbon receptor (AHR). zfAHR1 and zfAHR2 share 40% amino acid identity overall and 58% in the N-terminal half. The zfAHR1 gene maps to linkage group 16 in a region that shares conserved synteny with human chromosome 7 containing the human AHR, suggesting that the zfAHR1 is the ortholog of the human AHR. zfAHR2 maps to a separate linkage group (LG22). Both zfAHR mRNAs are expressed in early development, but they are differentially expressed in adult tissues. zfAHR2 can dimerize with zfARNT2b and binds with specificity to dioxin-responsive elements (DREs). Under identical conditions, zfAHR1/zfARNT2b/DRE complexes are formed; however, the interactions are considerably weaker. In COS-7 cells expressing zfARNT2b and zfAHR2, 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) exposure leads to a significant induction of dioxin-responsive reporter genes. In identical experiments, TCDD exposure fails to induce the reporter gene in zfAHR1-expressing cells. Ligand-binding experiments suggested that the differential zfAHR activities are attributable to differences in TCDD binding because only zfAHR2 exhibits high-affinity binding to [ 3 H]TCDD or â€-naphthoflavone. Finally, using chimeric zfAHR1/zfAHR2 constructs, the lack of TCDDmediated transcriptional activity was localized to the ligandbinding and C-terminal domains of zfAHR1.The aryl hydrocarbon receptor (AHR) is a member of the basic helix-loop-helix PAS family of proteins. Members of this family include the aryl hydrocarbon receptor nuclear translocators (ARNT, ARNT2, and ARNT3), hypoxia-inducible factor 1âŁ, Drosophila melanogaster single-minded, D. melanogaster period, Clock, and others. These proteins are involved in mediating responses to environmental contaminants, low oxygen tension and glucose, circadian rhythm, and various other cues (for review, see Gu et al., 2000). The basic components of the AHR signal transduction pathway are well understood (for review, see Schmidt and Bradfield, 1996). The cytosolic AHR is complexed with at least three chaperone proteins, two molecules of HSP90 and the aryl hydrocarbon interacting protein (AIP, also known as ARA9 or XAP2), enabling proper conformation for ligand binding. Once bound by ligands such as 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), the cytosolic AHR translocates to the nucleus, dissociates from the chaperone proteins, and dimerizes with ARNT. This heterodimeric AHR/ARNT complex associates with specific DNA sequences termed dioxin-response elements (DRE, alternatively known as xenobiotic response el-