Using PCR and an automated laser fluorescent DNA sequencer, we amplified and sequenced a 1,234-bp fragment of the citrate synthase-encoding gene ( g U ) of 28 bacteria belonging to the genus Rickettsia. Comparative sequence analysis showed that most of the spotted fever group (SFG) rickettsiae belonged to one of two subgroups. The first subgroup included Rickettsia massiliae, strain Bar 29, Rickettsia rhipicephali, "Rickettsia aeschlimanni," and Rickettsia montana, which have been isolated only from ticks. The second subgroup was larger and included the majority of the human pathogens and also rickettsiae isolated only from ticks; the members of this subgroup were strain S, Rickettsia apicae, "Rickettsia mongolotimonae," Rickettsia sibirica, Rickettsia parkeri, Rickettsia conorii, Rickettsia rickettsii, the Thai tick typhus rickettsia, the Israeli tick typhus rickettsia, the Astrakhan fever rickettsia, "Rickettsia slovaca," and Rickettsia japonica. The sequence analysis also showed that the tick-borne organisms Rickettsia helvetica and Rickettsia australis and the mite-borne organism Rickettsia akari were associated with the SFG cluster; that Rickettsia prowazekii and Rickettsia typhi, two representatives of the typhus group, clustered together; and that Rickettsia Canada, Rickettsia bellii, and the AB bacterium probably represent three new groups. We compared the phylogenetic trees inferred from citrate synthase gene sequences and from 16s ribosomal DNA (rDNA) sequences. For rickettsial phylogeny, the citrate synthase approach was more suitable, as demonstrated by significant bootstrap values for all of the nodes except those in the larger subgroup defined above. We also compared phylogenetic analysis results obtained in a comparison of the sequences of both genes for all of the representatives of the domain Bacteria for which the gZtA sequence was determined. We believe that comparison of glL4 sequences could be a complementary approach to 16s rDNA sequencing for inferring bacterial evolution, especially when unstable phylogenetic models are obtained from ribosomal sequences because of high levels of sequence similarity between the bacteria studied.Rickettsiae belong to the order Rickettsiales, whose members were described as obligately intracellular gram-negative microorganisms (55). Several species cause disease in humans or in other vertebrate and invertebrate hosts and have a worldwide distribution. Recently, on the basis of 16s rRNA sequence similarity, Rickettsia tsutsugamushi was removed from the genus Rickettsia and was renamed Orientia tsutsugarnushi (48). The genus Rickettsia is presently divided into two groups: the typhus group (TG), which includes three species (Rickettsia prowazekii, the agent of the epidemic typhus, Rickettsia typhi, which causes murine typhus, and Rickettsia Canada, which has been isolated only from ticks), and the spotted fever group (SFG). The number of recognized members of the SFG increased following the development of an improved cell culture isolation technique (the shell...