As the most abundant eukaryotic mRNA modification, N
6
-methyladenosine (m
6
A) plays a crucial role in regulating multiple biological processes. This methylation is regulated by methyltransferases and demethylases. However, the regulatory role and mode of action of m
6
A demethylases in fungi remain poorly understood. In this study, we demonstrate that CpALKBH is a demethylase in
Cryphonectria parasitica
that removes m
6
A modification from single-stranded RNA
in vitro
. The deletion of
CpALKBH
resulted in a significant increase in the m
6
A methylation levels, along with decreases in the growth rate, sporulation, and virulence in
C. parasitica
. Additionally, CpZap1—a transcription factor—was identified as a downstream target of CpALKBH demethylase based on RNA sequencing analysis. We confirmed that CpALKBH demethylase regulates
CpZap1
mRNA stability in an m
6
A-dependent manner. Furthermore, through MazF assay, we found that methylation of
CpZap1
at position 1935A is regulated by both CpALKBH demethylase and CpMTA1 methyltransferase.
CpZap1
significantly influences the fungal phenotype and virulence, thereby restoring the abnormal phenotype observed in ∆
CpALKBH
mutants. Collectively, our findings highlight the essential role of CpALKBH as an m
6
A demethylase in the development and virulence of
C. parasitica
, while also elucidating the molecular mechanisms through which m
6
A modification impacts
CpZap1
mRNA stability.
IMPORTANCE
N
6
-methyladenosine (m
6
A) is the most abundant eukaryotic mRNA modification and is involved in various biological processes. Methyltransferases and demethylases regulate the m
6
A modification, but the regulatory role of m
6
A demethylases in fungi remains poorly understood. Here, we demonstrated that CpALKBH functions as a demethylase in
Cryphonectria parasitica
. The deletion of
CpALKBH
leads to a significant increase in m
6
A levels and a reduction in fungal growth, sporulation, and virulence. We identified
CpZap1
as a downstream target of CpALKBH, with CpALKBH regulating
CpZap1
mRNA stability in an m
6
A-dependent manner. Additionally, our findings indicate that methylation at position 1935A of
CpZap1
is regulated by both the CpALKBH demethylase and the CpMTA1 methyltransferase. Given its critical role in fungal development and virulence, overexpression of
CpZap1
can rescue abnormal phenotypes of ∆
CpALKBH
mutant. Overall, these findings contribute to improving our understanding of the role of m
6
A demethylase in fungi.