The ferric uptake regulatory protein, Fur, functions as a global regulatory protein of gene transcription in the mucosal pathogen Neisseria gonorrhoeae. We have shown previously that several N. gonorrhoeae Furrepressed genes are expressed in vivo during mucosal gonococcal infection in men, which suggests that this organism infects in an iron-limited environment and that Fur is expressed under these conditions. In this study we have demonstrated expression of the gonococcal fur gene in vitro, in human cervical epithelial cells, and in specimens from female subjects with uncomplicated gonococcal infection. In vitro studies confirmed that the expression of the gonococcal fur gene was repressed during growth under iron-replete growth conditions but that a basal level of the protein was maintained. Using GFP transcriptional fusions constructed from specific Fur binding sequences within the fur promoter/operator region, we determined that this operator region was functional during N. gonorrhoeae infection of cervical epithelial cells. Furthermore, reverse transcription-PCR analysis, as well as microarray analysis, using a custom Neisseria Fur and iron regulon microarray revealed that several Fur-and iron-regulated genes were expressed during N. gonorrhoeae infection of cervical epithelial cells. Microarray analysis of specimens obtained from female subjects with uncomplicated gonococcal infection corroborated our in vitro findings and point toward a key role of gonococcal Fur-and iron-regulated genes in gonococcal disease.Iron homeostasis is tightly regulated in almost all bacteria because of the toxicity that results from the formation of ironcatalyzed reactive oxygen species even though iron is essential for a number of physiological functions (53). The iron-responsive transcriptional regulator Fur (ferric uptake regulator) controls the transcription of many iron-regulated genes in several microorganisms (10,11,23,24,47,48). Homologs of Fur are widespread in gram-negative bacteria and are also found in some gram-positive organisms (6, 9, 37). The role of the Fur protein as a repressor has been well documented where Fur forms a dimer with ferrous iron and binds to a consensus sequence (Fur-box) that overlaps the promoters of iron-regulated genes, resulting in the inhibition of transcription. The regulation of gene transcription by Fur and iron has been defined by the construction of Fur mutants in a variety of organisms, including Bacillus subtilis (2), Campylobacter jejuni (29), Escherichia coli (38), Vibrio cholerae (40), Neisseria meningitidis (10, 47), and Helicobacter pylori (17). Fur also functions to control the expression of genes required for pathogenesis (33, 37, 44, 52) in addition to controlling the transcription of iron transport genes. The Fur protein plays a role in the acid shock response (26), detoxification of oxygen radicals (14, 28), production of toxins and other virulence factors (37, 51), quorum sensing (8), and the regulation of metabolic pathways (42, 48) in a number of organisms. Furthermore...