Alternations in the liver metabolome, skin and serum antioxidant function of silver pomfret (Pampus Argenteus) is induced by jellyfish feeding

Wang, Qian; Jiao, Zhilun; Wang, Yabing; Zhao, Jiaxing; Ma, Lan; Shi, Zhaohong; Lian, Shiya; Peng, Shi-Qing

doi:10.1007/s13205-021-02702-1

Cited by 3 publications

(1 citation statement)

References 24 publications

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“…Additionally, P. argenteus and P. echinogaster exhibit remarkable morphological similarities, prompting Liu and Li (2013b) to meticulously delineate the distinguishing characteristics of the former species. Recently published studies have predominantly focused on P. argenteus, encompassing investigations into its early developmental characteristics, biological properties, and gene functionality, among other aspects (Gao et al, 2020;Al-Abdul-Elah et al, 2021;Wang et al, 2021;Yang et al, 2021a;Yang et al, 2021b). Researchers have employed diverse molecular markers to investigate disparities among Pampus species.…”

Section: Introductionmentioning

confidence: 99%

Whole-genome survey reveals interspecific differences in genomic characteristics and evolution of Pampus fish

Zhao,

Zheng,

Song

et al. 2024

Front. Mar. Sci.

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Pampus belongs to the Perciformes, Stromateoidei, and Stromateidae and are widely distributed throughout the Indian Ocean and the Western Pacific. In this study, we employed next-generation sequencing to generate comprehensive genomic data for Pampus punctatissimus and Pampus echinogaster and subsequently compared the obtained genomic information with the published data of Pampus argenteus. P. echinogaster was identified to be the largest genome size (602 Mb), heterozygosity (1.38%), and repetitive sequence ratio (33.06%), while similar genome sizes between P. punctatissimus (540 Mb) and P. argenteus (550 Mb) were observed. A total of 402,921 and 628,298 SSRs were identified for P. punctatissimus and P. echinogaster, respectively. Additionally, 1,876, 638, and 394 single-copy homologous genes were identified from P. punctatissimus, P. echinogaster, and P. argenteus, respectively. The KEGG enrichment results of the unique single-copy genes to the three species were significantly different in genetic information processing, protein processing, and metabolic functions. The complete mitochondrial genomes of P. punctatissimus and P. echinogaster were successfully assembled, and the resulting phylogenetic relationships align with the currently reported taxonomic status of species in the Stromateoidei. Additionally, population size analysis using PSMC revealed that P. punctatissimus experienced one bottleneck effect, while P. echinogaster underwent two bottleneck events during the Pleistocene Glacial Epoch.

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Section: Introductionmentioning

confidence: 99%

Whole-genome survey reveals interspecific differences in genomic characteristics and evolution of Pampus fish

Zhao,

Zheng,

Song

et al. 2024

Front. Mar. Sci.

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Chromosome-level genome assembly of the silver pomfret Pampus argenteus

Wei,

Xiao,

Liu

et al. 2024

Sci Data

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Pampus argenteus (Euphrasen, 1788) is one of the major fishery species in coastal China. Pampus argenteus has a highly specialized morphology, and its declining fishery resources have encouraged massive research efforts on its aquacultural biology. In this study, we reported the first high-quality chromosome-level genome of P. argenteus obtained by integrating Illumina, PacBio HiFi, and Hi-C sequencing techniques. The final size of the genome was 518.06 Mb, with contig and scaffold N50 values of 20.47 and 22.86 Mb, respectively. The sequences were anchored and oriented onto 24 pseudochromosomes based on Hi-C data corresponding to the 24-chromatid karyotype of P. argenteus. A colinear relationship was observed between the P. argenteus genome and that of a closely related species (Scomber japonicus). A total of 24,696 protein-coding genes were identified from the genome, 98.9% of which were complete BUSCOs. This report represents the first case of high-quality chromosome-level genome assembly for P. argenteus and can provide valuable information for future evolutionary, conservation, and aquacultural research.

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Recent Trends in Live Feeds for Marine Larviculture: A Mini Review

et al. 2022

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In marine larviculture, farmed larvae mainly rely on the alimentation of a group of small-sized phytoplankton and zooplankton referred to as live feed. Under the diversifying demands of human consumption and ornamental aquarium industry, new species of live feed and their innovative production methods are essential focuses for sustainable larviculture of many emerging fish and invertebrate species. The selection of proper live feed for larval feeding is based on several parameters, such as size, morphology, nutritional value, stock density, and growth rate. This review aims to highlight the biological characteristics, production approach, common larviculture applications as well as recent innovations in the aquaculture technology of live feed organisms (microalgae, ciliated protists, rotifer, Artemia, copepod, and others).

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Alternations in the liver metabolome, skin and serum antioxidant function of silver pomfret (Pampus Argenteus) is induced by jellyfish feeding

Cited by 3 publications

References 24 publications

Whole-genome survey reveals interspecific differences in genomic characteristics and evolution of Pampus fish

Whole-genome survey reveals interspecific differences in genomic characteristics and evolution of Pampus fish

Chromosome-level genome assembly of the silver pomfret Pampus argenteus

Recent Trends in Live Feeds for Marine Larviculture: A Mini Review

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