Two isoforms of estrogen receptor (ER) have been described: ER␣ and ER. The initial gene targeting of ER␣, consisting in the introduction of a Neo cassette in exon 1 [␣ERKO, hereafter called ER␣-Neo KO (knockout)], was reported in 1993. More recently, another mouse deficient in ER␣ because of the deletion of exon 2 (ER␣KO, hereafter called ER␣-⌬2 KO) was generated. In ovariectomized ER␣-wild-type mice, estradiol (E2) increases uterine weight and basal production of endothelial nitric oxide (NO). Both of these effects are abolished in ER␣-⌬2 KO mice. In contrast, we show here that both of these effects of E 2 are partially (uterine weight) or totally (endothelial NO production) preserved in ER␣-Neo KO. We also confirm the presence of two ER␣ mRNA splice variants in uterus and aorta from ER␣-Neo KO mice. One of them encodes a chimeric ER␣ protein (ER␣55), partially deleted in the A͞B domain, that was detected in both uterus and aorta by Western blot analysis. The other ER␣ mRNA splice variant codes for an isoform deleted for the A͞B domain (ER␣46), which was detected in uterus of ER␣-Neo KO, and wild-type mice. This protein isoform was not detected in aorta. The identification of these two N-terminal modified isoforms in uterus, and at least one of them in aorta, probably explains the persistence of the E 2 effects in ER␣-Neo KO mice. Furthermore, ER␣-Neo KO mice may help in the elucidation of the specific functions of full-length ER␣ (ER␣66) and ER␣46, both shown to be physiologically generated in vivo.