The protein output of a gene is often regulated by splicing the primary RNA transcript into multiple mRNAs that differ in their coding exon sequences. These alternative splicing patterns are found in all kinds of genes and tissues. However in the nervous system, proteins involved in two processes show particularly high levels of molecular diversity created by alternative splicing. These are proteins that determine the formation of neuronal connections during development and proteins that mediate cell excitation. Although some systems of splicing are highly complex, work on simpler model systems has started to identify the molecular components that determine these splicing switches. This review describes how alternative splicing is central to the control of neuronal function, and what is currently known about its mechanisms of regulation. How errors in splicing might contribute to diseases of the nervous system is also discussed.
3The recent genomic description of ~35,000 human genes and the earlier Drosophila genome sequence with ~13,600 genes generated much discussion of how a complex organism can be described by so few genes (Adams et al., 2000;Claverie, 2001;Consortium, 2001; Venter et al., 2001). It is clear that the protein complexity of an organism far outstrips the number of transcription units (Black, 2000;Graveley, 2001). The most common means of producing multiple proteins from one gene is through the alternative splicing of the gene's pre-mRNA. The processing of a primary gene transcript can be altered in the inclusion of exons, or the position of individual splice sites or polyadenylation sites to produce a variety of transcripts that differ in their encoded polypeptides ( Figure 1). Such mRNA sequence alterations make crucial changes in protein activity that are precisely regulated by the cellular environment. Alternative splicing is particularly common in the mammalian nervous system. Proteins involved in all aspects of neuronal development and function are diversified in this manner. From hundreds of examples, we focus on a few systems where either the regulatory mechanisms or the effects of altered splicing on protein function are better understood.
Cell-Cell Interactions and Neuronal DifferentiationThe most complex patterns of splicing so far described are in molecules important for the differentiation of neurons and the formation of their intricate connections. The DSCAM and Neurexin transcripts show a spectacular variety of splicing patterns numbering in the thousands and have been reviewed elsewhere (Black, 2000;Grabowski and Black, 2001;Graveley, 2001;. DSCAM plays a role in axon guidance in the developing Drosophila nervous system (Schmucker et al., 2000). Neurexin may act later during 4 synaptic differentiation (Scheiffele et al., 2000). N-cadherins are another example of a diverse family of related proteins that are thought to be involved in the formation of neuronal connections (Wu and Maniatis, 1999;Wu and Maniatis, 2000). How the splicing variation changes the activity of the...