Burkholderia vietnamiensis PR1 301 (PR1) exhibits pH-dependent nickel (Ni) tolerance, with lower Ni toxicity observed at pH 5 than at pH 7. The Ni tolerance mechanism in PR1 is currently unknown, and traditional mechanisms of Ni resistance do not appear to be present. Therefore, 2D gel electrophoresis was used to examine changes in protein expression in PR1 with and without Ni (3.4 mM) at pH 5 and 7. Proteins with both a statistically significant and at least a twofold difference in expression level between conditions (pH, Ni) were selected and identified using MALDI-TOF-MS or LC-MS. Results showed increased expression of proteins involved in cell shape and membrane composition at pH 5 compared with pH 7. Scanning electron microscopy indicated elongated cells at pH 5 and 6 compared with pH 7 in the absence of Ni. Fatty acid methyl ester analysis showed a statistically significant difference in the percentages of long-and short-chain fatty acids at pH 5 and 7. These findings suggest that changes in membrane structure and function may be involved in the ability of PR1 to grow at higher concentrations of Ni at pH 5 than at pH 7.
INTRODUCTIONNickel (Ni) is a common co-contaminant in soils and sediments due to anthropogenic pollution (e.g. mining, refining, metal plating) and natural emissions (e.g. volcanic activity and dust) (Nriagu, 1980;Adriano, 2001). High Ni concentrations also occur naturally in ultramafic (serpentine) soils and sediments (Proctor & Woodell, 1975). These higher concentrations of Ni (micro-and millimolar concentrations) can be toxic to micro-organisms through the displacement of other divalent cations (e.g. Mg 2+ , Zn 2+ , Fe 2+ ) from key enzymes (Hausinger, 1993). In micromolar quantities, Ni has also been shown to inhibit DNA replication, translation and transcription by limiting the supply of ATP (Guha & Mookerjee, 1979) and can cause oxidative damage in cells as a result of the formation of oxygen radicals (Sigler et al., 1999). Because of its frequent occurrence at US Environmental Protection Agency National Priority List sites and its toxicity, Ni is ranked 53rd on the 2007 CERCLA priority list of hazardous substances (http://www.atsdr.cdc.gov/cercla/07list.html).Exposure of bacteria to stressors, such as toxic metals or pH changes, can induce altered protein expression either Abbreviations: ACP, acyl carrier protein; AHL, acylhomoserine lactone; FAME, fatty acid methyl ester; PHA, polyhydroxyalkanoate; PR1, Burkholderia vietnamiensis PR1 301 ; SEM, scanning electron microscopy; SOD, superoxide dismutase; TFE, 2,2,2-trifluoroethanol. et al., 2001). Identification of proteins with altered expression levels when bacteria are exposed to stressors may lead to a better understanding of the stressor's target as well as the mechanisms of adaptation that allow survival and growth under these adverse conditions.Environmental pH alone has been shown to be a strong predictor of microbial diversity and composition in soils (Fierer & Jackson, 2006). Many metal-contaminated sites are acidic due to c...