Two major C-terminal variants ending at Val40 and Ala42 constitute the majority of amyloid -protein (A), which undergoes postsecretory aggregation and deposition in the Alzheimer disease (AD) brain. To probe the differential pathobiology of the two A variants, we used an in vivo paradigm in which freshly solubilized A1-40 or A1-42 was injected into rat brains, followed by examination using Congo red birefringence, A immunohistochemistry, and electron microscopy. In the rat brain, soluble A 1-40 and A1-42 formed aggregates, and the A1-40 but not the A1-42 aggregates showed Congo red birefringence. Electron microscopy revealed that the A1-40 aggregates contained fibrillar structures similar to the amyloid fibrils of AD, whereas the A1-42 aggregates contained nonfibrillar amorphous material. Preincubation of A1-42 solution in vitro led to the formation of birefringent aggregates, and after injection of the preincubated A1-42, the aggregates remained birefringent in the rat brain. Thus, a factor or factors might exist in the rat brain that inhibit the fibrillar assembly of soluble A1-42. To analyze the postsecretory processing of A, we used the same in vivo paradigm and showed that A1-40 and A1-42 were processed at their N termini to yield variants starting at pyroglutamate, and at their C termini to yield variants ending at Val40 and at Val39. Thus the normal rat brain could produce enzymes that mediate the conversion of A 1-40/1-42 into processed variants similar to those in AD. This experimental paradigm may facilitate efforts to elucidate mechanisms of A deposition evolving into amyloid plaques in AD.