The rainbow trout egg vitelline envelope (VE) is constructed of three proteins, called VE␣, VE, and VE␥, that are synthesized and secreted by the liver and transported in the bloodstream to the ovary, the site of VE assembly around eggs. All three proteins possess an N-terminal signal peptide, a zona pellucida domain, a consensus furin-like cleavage site (CFLCS) close to the C terminus, and a short propeptide downstream of the CFLCS. Proteolytic processing at the CFLCS results in loss of the short C-terminal propeptide from precursor proteins and enables incorporation of mature proteins into the VE. Here mass spectrometry (matrix-assisted laser desorption ionization time-of-flight-mass spectrometry and liquid chromatography-mass spectrometry with a micromass-quadrupole TOF hybrid mass and a QSTAR Pulsar i mass spectrometer) was employed with VE proteins isolated from rainbow trout eggs in a peptidomics-based approach to determine the following: 1) the C-terminal amino acid of mature, proteolytically processed VE proteins; 2) the cellular site of proteolytic processing at the CFLCS of VE precursor proteins; and 3) the relationship between proteolytic processing and limited covalent cross-linking of VE proteins. Peptides derived from the C-terminal region were found for all three VE proteins isolated from eggs, indicating that processing at the CFLCS occurs after the arrival of VE precursor proteins at the egg. Consistent with this conclusion, peptides containing an intact CFLCS were also found for all three VE proteins isolated from eggs. Furthermore, peptides derived from the C-terminal propeptides of VE protein heterodimers VE␣-VE␥ and VE-VE␥ were found, suggesting that a small amount of VE protein can be covalently cross-linked on eggs prior to proteolytic processing at the CFLCS. Collectively, these results provide important evidence about the process of VE formation in rainbow trout and other non-cyprinoid fish and allow comparisons to be made with the process of zona pellucida formation in mammals.All vertebrate eggs are surrounded by an extracellular coat, referred to as a chorion, vitelline envelope (VE), 2 or zona pellucida (ZP) (1). The coats surrounding fish and mammalian eggs, often designated as VE and ZP, respectively, are located between the oolemma and surrounding follicle cells and frequently exhibit distinguishable layers. These egg coats have been shown to play important roles during oogenesis, fertilization, and early embryogenesis.Proteins that constitute the VE and ZP are highly conserved and related to each other (2). For example, a feature common to VE and ZP proteins is the presence of a so-called ZP domain (3-5), a sequence of ϳ260 amino acids that is responsible for polymerization of the proteins into long fibrils or filaments (6). Rainbow trout (Oncorhynchus mykiss) VEs consist of at least three proteins, called VE␣(ϳ58 kDa), VE(ϳ52 kDa), and VE␥(ϳ47 kDa), that possess an N-terminal signal peptide (SP), a proline-glutamine-(PQ-) rich (PQ) region, a ZP domain, a consensus furin-like ...