As the culmination of several years of experiments, we propose a complete amino-acid sequence for porcine pepsin, an enzyme containing 327 amino-acid residues in a single polypeptide chain. In the sequence determination, the enzyme was treated with cyanogen bromide. Five resulting fragments were purified. The amino-acid sequence of four of the fragments accounted for 290 residues. Because the structure of a 37-residue carboxyl-terminal fragment was already known, it wag not studied. The alignment of these fragments was determined from the sequence of methionyl-peptides we had previously reported. We also discovered the locations of activesite aspartyl residues, as well as the pairing of the three disulfide bridges. A minor component of commercial crystalline pepsin was found to contain two extra aminoacid residues, Ala-Leu-, at the amino-terminus of the molecule. This minor component was apparently derived from a different site of cleavage during the activation of porcine pepsinogen.Although pepsin (EC 4.3.3.1) was one of the first enzymes to be discovered and purified in crystalline form, its structurefunction relationship is understood only superficially. In recent years, workers have realized that the complete elucidation of the mechanism of action of an enzyme depends upon the detailed knowledge of the chemical and three-dimensional structure of its molecule. For this reason, we undertook a long-term study of the complete amino-acid sequence of porcine pepsin.A number of studies have contributed to our knowledge of the partial sequence of porcine pepsin. They include investigations of the amino-acid sequences at the regions near the carboxyl-terminus (1-4), the amino-terminus (5, 6), the three disulfide bonds (7), the tryptophanyl residues (8, 9), the phosphoseryl residue (7, 10), two separate active-site aspartyl residues (11,12), and a number of small peptides (13,14). We have confirmed most of these previous findings and now present the complete amino-acid sequence of this enzyme.
METHODSPorcine pepsin (three-times crystallized) was obtained from Worthington. The enzyme was either alkali-denatured (7) or reduced and aminoethylated (15) and subjected to cyanogenbromide cleavage (16). Preliminary experiments indicated that at room temperature one of the methionyl bonds (MetThr at residues 80-81) was cleaved less than 5% by cyanogen * Present address: